Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0151.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57181| Best HMM Match : bZIP_1 (HMM E-Value=0.19)                   30   0.92 
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            27   8.6  
SB_55030| Best HMM Match : Toxin_27 (HMM E-Value=1.2)                  27   8.6  
SB_35074| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_8155| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_57181| Best HMM Match : bZIP_1 (HMM E-Value=0.19)
          Length = 104

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 422 LNFDLDTEREKRRARRDVDSNITNGRFNKLEHLQNDLVHTIEMLKKRIEILEATCKR 252
           L+FD D+E EK R   +V          +L+ L   L      L+   ++L+ATC++
Sbjct: 19  LSFDFDSETEKIRREYEVFRVSKQTEIAELQVLNEKLQSENRRLRGESKVLQATCQK 75


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
 Frame = -3

Query: 248 ILFLSVMNFHSRKSKLVMYSTYILYF*CFNIRTTLLHKVFQNSSKDL*YC-QTVAIY*VH 72
           +LFLS+   H+ +S L+   T +      +I  T++H V ++ S  + +  ++++I  VH
Sbjct: 83  VLFLSITIAHAHRSLLI---TIVHVHRSLSI--TIVH-VHRSLSITIVHAHRSLSITIVH 136

Query: 71  MHFVMSLLLIHVLMFSLITILY 6
           +H  +S+ ++HV     ITI++
Sbjct: 137 VHRSLSITIVHVHRSLSITIVH 158


>SB_55030| Best HMM Match : Toxin_27 (HMM E-Value=1.2)
          Length = 110

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 398 REKRRARRDVDSNITNGRFNKLEHLQNDLVHTIEMLKKRIEILEATCKRTILFLSVM 228
           R++  +RR+    +++ R + L   Q         L  R + LE+TC+   L L+V+
Sbjct: 2   RKRHASRREKGGQVSDFRLHVLHACQATFPGCKRKLSNRGDPLESTCRHASLALAVV 58


>SB_35074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 281 IEILEATCKRTILFLSVMNFHSRKSKLVMYSTYI 180
           + I+ ATC   IL L +++FH  + +LV Y ++I
Sbjct: 239 VTIIYATCWLPILVLYIVSFH--RPELVAYGSFI 270


>SB_8155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = -3

Query: 308 HTIEMLKKRIEILE-----ATCKRTILFLSVMNFHSRKS 207
           H++E + K +++++     A C R     S +NFH RKS
Sbjct: 39  HSLETVLKAVQVVDDFGCIAECSRAKESCSAVNFHKRKS 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,140,836
Number of Sequences: 59808
Number of extensions: 239874
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)