Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0151.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.4  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 401 EREKRRARRDV 369
           E +KRRARRD+
Sbjct: 153 EHKKRRARRDI 163


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 367 IPILQTAALINWN 329
           + IL T  +INWN
Sbjct: 309 VSILVTVIIINWN 321


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 305 TIEMLKKRIEILEATCKR 252
           TIE LKK I+ L   C +
Sbjct: 2   TIEELKKTIKNLRKVCSK 19


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 60  YKVHVHLINGYCLTIS*ILRTILKNFM 140
           YKV V +I G     + +LR ++ +F+
Sbjct: 132 YKVDVEVIGGASRGCTAVLRCVVPSFV 158


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 60  YKVHVHLINGYCLTIS*ILRTILKNFM 140
           YKV V +I G     + +LR ++ +F+
Sbjct: 132 YKVDVEVIGGASRGCTAVLRCVVPSFV 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,975
Number of Sequences: 438
Number of extensions: 2625
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)