Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0150.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   1.3  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   5.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   9.4  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    24   9.4  
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    24   9.4  

>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 184 ILKLTSREITSNIPESLSRVTVPHH 258
           ILKLT +  + N+P  +    +PHH
Sbjct: 218 ILKLTEKYSSQNVPFDVYAAQIPHH 242


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 123 GFSDTFKMPEIPEIKSLEFDDIKTHVA 203
           GFSD  ++ E P    + +DDI +H A
Sbjct: 919 GFSDINEIKEHPFFNGINWDDIFSHEA 945


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 90   FVWEDDDDLFPGFSD--TFKMPEIPEIKSLEFDDIKTHV--AGDNEQYTGE 230
            F WED+D+   G+ D   +   E+ E  S  F+ ++       DN+ +  E
Sbjct: 1943 FEWEDEDNASSGYEDELDYNEDEVGENDSTTFEAMENAFTETSDNDDHLEE 1993


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 9   YFPSTSLIMAFTKFLFVITLITIASAGFVW 98
           YF + SL + F  FLF+I  I +     VW
Sbjct: 894 YFKACSLFLIFLYFLFIIGGIGMNVGTNVW 923


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 194 SFNIIKFKRLYLWYLWHLERI 132
           SF +++  R +LW  +HL+ I
Sbjct: 365 SFEMLEILRRFLWLFFHLDAI 385


>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 35  GVYEVSFCDYINYN 76
           G+Y  +FCD IN+N
Sbjct: 155 GLYGFAFCDLINHN 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,617
Number of Sequences: 5004
Number of extensions: 28438
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)