Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0150.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52747| Best HMM Match : Semialdhyde_dh (HMM E-Value=6.5)            29   2.3  
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11)         27   7.2  
SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)           27   9.5  

>SB_52747| Best HMM Match : Semialdhyde_dh (HMM E-Value=6.5)
          Length = 144

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 35  GVYEVSFCDYINYNRERWLCMGGR*RFVPGILRYVQDARDTRD 163
           G++++S C Y +  +E WLC+    +   G+L  + D + +RD
Sbjct: 90  GIFKISGCFYFDTPKEGWLCVQYNIQ-SGGVLYAMDDEKASRD 131


>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2362

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 106  MTICSRDSQIRSRCQRYQR*SLLNLMILKLTSREITSNIPESLSRVTV 249
            MT+C   +Q+      ++R  LLN  +  +TS E+T+N+  S+ RV V
Sbjct: 1119 MTMCDVMNQLMEWRAAHERTLLLNADMSDVTSAEVTANL--SIIRVLV 1164


>SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11)
          Length = 509

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 54  FVITLITIASAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQ 218
           F++T +   S+   W DDD +     DT  +P   +  +LE +  +++ A +N++
Sbjct: 29  FLVTFLLTISSRIAWADDDQVLDLNCDT--LPSQSKDGALETETKESNPAAENKR 81


>SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)
          Length = 898

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 87  GFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAG 206
           GF   + D LF    +  +  +IP I++L  DD+K  + G
Sbjct: 849 GFCERNRDVLFKDLIELMQSSDIPFIRTLFPDDVKAEMRG 888


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,556,881
Number of Sequences: 59808
Number of extensions: 197812
Number of successful extensions: 490
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)