Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0150.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-8|CAB02896.2|  409|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF099925-8|AAR12969.2|  119|Caenorhabditis elegans Hypothetical ...    27   6.3  
AF099925-4|AAR12970.2|  273|Caenorhabditis elegans Hypothetical ...    27   6.3  
AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z73105-1|CAA97442.2|  525|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AY515708-1|AAR99658.1|  525|Caenorhabditis elegans bestrophin 1 ...    27   8.3  

>Z81055-8|CAB02896.2|  409|Caenorhabditis elegans Hypothetical
           protein F01G10.7 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 349 IFVFHDLFFDGFSVICQLANSAAAHCLAVDRGEEL 245
           +F+ H L  DGFS I  LAN +A    A D G ++
Sbjct: 75  VFMQHGLLADGFSWIPNLANQSAGFVFA-DAGFDI 108


>AF099925-8|AAR12969.2|  119|Caenorhabditis elegans Hypothetical
          protein K01A2.3 protein.
          Length = 119

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 15 PSTSLIMAFTKFLFVITLITIASAGFVW 98
          P  +++ A    +FV+ L+ +A  GFVW
Sbjct: 15 PKITVVGAIILMVFVLCLLLLAFGGFVW 42


>AF099925-4|AAR12970.2|  273|Caenorhabditis elegans Hypothetical
           protein K01A2.4 protein.
          Length = 273

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 15  PSTSLIMAFTKFLFVITLITIASAGFVW 98
           P  +++ A    +FV+ L+ +A  GFVW
Sbjct: 169 PKITVVGAIILMVFVLCLLLLAFGGFVW 196


>AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical
           protein T17A3.7 protein.
          Length = 290

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 182 IKFKRLYLWYLWHLERI*ESREQIVI 105
           +KF+RL++W   HL+R+    E +++
Sbjct: 153 LKFRRLHIWANCHLQRVPMKLEDLLV 178


>Z73105-1|CAA97442.2|  525|Caenorhabditis elegans Hypothetical
           protein R13.3 protein.
          Length = 525

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 12  FPSTSLIMAFTKFLFVITLITIASAGF--VWEDDDD 113
           +P+   +M+  +F+FV+  + +A +    + EDDDD
Sbjct: 275 YPTVPFVMSILQFIFVVGWMKVAESMINPLGEDDDD 310


>AY515708-1|AAR99658.1|  525|Caenorhabditis elegans bestrophin 1
           protein.
          Length = 525

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 12  FPSTSLIMAFTKFLFVITLITIASAGF--VWEDDDD 113
           +P+   +M+  +F+FV+  + +A +    + EDDDD
Sbjct: 275 YPTVPFVMSILQFIFVVGWMKVAESMINPLGEDDDD 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,677,118
Number of Sequences: 27780
Number of extensions: 152692
Number of successful extensions: 414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)