Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0150.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.38 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.88 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.88 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 147 PEIP-EIKSLEFDDIKTHVA-GDNEQYTGE 230
           PEI  E++ +E+DDIKT ++ G N+    E
Sbjct: 290 PEIKKEVEDMEYDDIKTELSTGMNDDIPPE 319


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 69   ITIASAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIK 191
            I++A   FV  +  ++ PG  D    PE+ E +  + D +K
Sbjct: 1856 ISVAETTFVGGNQGNVVPGNGDRSDRPELSEAE-CDIDSLK 1895


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 69   ITIASAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIK 191
            I++A   FV  +  ++ PG  D    PE+ E +  + D +K
Sbjct: 1852 ISVAETTFVGGNQGNVVPGNGDRSDRPELSEAE-CDIDSLK 1891


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 269 KTVSSGGVSELTNDGKAVEEKVMEYKDGD*INPAIIHEXKNLSQKYYFTKGD 424
           K  S GG  E T +G+A EE     +        +IH  K++++ Y  T  D
Sbjct: 359 KAHSKGGTLENTINGRADEEAAPAPQH-------LIHPGKDINKLYGMTPSD 403


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 269 KTVSSGGVSELTNDGKAVEEKVMEYKDGD*INPAIIHEXKNLSQKYYFTKGD 424
           K  S GG  E T +G+A EE     +        +IH  K++++ Y  T  D
Sbjct: 359 KAHSKGGTLENTINGRADEEAAPAPQH-------LIHPGKDINKLYGMTPSD 403


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 269 KTVSSGGVSELTNDGKAVEEKVMEYKDGD*INPAIIHEXKNLSQKYYFTKGD 424
           K  S GG  E T +G+A EE     +        +IH  K++++ Y  T  D
Sbjct: 297 KAHSKGGTLENTINGRADEEAAPAPQH-------LIHPGKDINKLYGMTPSD 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,487
Number of Sequences: 438
Number of extensions: 1862
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)