Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0149.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    26   4.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.3  
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    25   7.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   9.7  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   9.7  

>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 165 YW*YDVY*AAVQLSSDAGSFLFERWGN 85
           +W  +VY         +G+F +ERWG+
Sbjct: 285 FWESEVYSKYFDYLDKSGNFFYERWGD 311


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 149  TSYYQYLLRLLPLGYDFTSLNTANVRFAMTLR*NGFLFFSKSLCCWRCLCRNCI 310
            TS  QY++ L+ L +DF   N     +   L  +G L  +K+    R  C N +
Sbjct: 1695 TSIIQYIIHLILLEFDFNGNNKKQKEYVTQLILSGLL--NKNTNSIRKTCMNIL 1746


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 71  NASLGVGSAVDVPPTKCT 18
           NASL  GS V++  T CT
Sbjct: 61  NASLSTGSPVEITSTSCT 78


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -1

Query: 296  ISISNNTMILKKTESHFILTSWQNVRLRYLEM*SHTPGVTGEADTGNMTSIEPPSSLVL 120
            +S+ N    L+ T   F LT+W  V   YL+       + G   +G + S+ P    V+
Sbjct: 1008 LSVENICKQLQTTPLSFFLTAWSTVLSSYLKT---NDFLVGTVVSGRVNSLLPNVDYVI 1063


>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 89  PHLSNKKEPASELSWTAAQ*TSYYQYLLRLLPLGYDFTSLNTANV 223
           P+  NK   A E+     Q   +Y+ ++R++ LGY    LN A +
Sbjct: 86  PYYKNKLRSA-EVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGL 129


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 423  SQSLTIY*VRFLLQKLVHRYMARYECTFFVLSFRPRRRIQF 301
            + SL +Y V FLLQ L         C    L+F+PRR+  F
Sbjct: 1584 NDSLYMYNV-FLLQCLTELLSGYNACKRCFLNFQPRRKAPF 1623


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
 Frame = -1

Query: 368 GTWQDTNAPSSSYXLGHDDVYNFDISISNNTMILKKTESHFILTSWQ--NVRLRYLEM*S 195
           G+  +++  SSS  L    ++N  +S S +T  L    +    ++ +  N+  R     +
Sbjct: 505 GSLANSSEHSSSPRLRGSPIHNQPVSSSKSTASLNTNNNGLRASTPEMANISTRSSSESN 564

Query: 194 HTPG--VTGEADTGNMTSIEPPSSLVLTRAPSCLKGGVIVET*NA 66
           +T      G+A   N+T  EP  +L +   PS +    +  T +A
Sbjct: 565 NTNSWPTVGDATIENLTQHEPTHALWVGNLPSGVSATTVATTFSA 609


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 65  KRFKSQRLPHLSNKKEPASELS 130
           K F + +LPH S+ +EP+S  S
Sbjct: 31  KCFSNSKLPHQSDLEEPSSACS 52


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 299 DISISNNTMI--LKKTESHFILTSWQNVRLRYLEM*SHTPGVTGEADTGNMTSIEPP 135
           D+++S+ + +  LK T +++  ++WQNV L+ +        +     T N+ ++  P
Sbjct: 601 DLNVSDFSTLDSLKFTVTYYYKSNWQNVSLQCVRRNKFMCALKNAIATTNLPAVADP 657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,466
Number of Sequences: 5004
Number of extensions: 47748
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)