Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0149.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1539 + 38107108-38109649,38110563-38110915 29 1.8
02_05_0398 - 28644632-28644889,28644997-28645032,28645101-286453... 29 3.2
07_03_0290 - 16305703-16305990,16306119-16306307,16306386-163064... 28 5.6
03_01_0075 - 618917-618980,619752-619818,619874-620029,620237-62... 28 5.6
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582... 28 5.6
01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797... 27 7.5
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 27 9.9
02_02_0631 - 12397517-12398452,12398693-12398819,12398971-123991... 27 9.9
>01_06_1539 + 38107108-38109649,38110563-38110915
Length = 964
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 374 YIGTWQDTNAPSSSYXLGHDDVYNFDISIS-NNTMILKKTESHFILTSWQNVRLRYLEM* 198
Y+G W ++++P Y + D I IS +N + S F L S +LR LE+
Sbjct: 45 YLGNWDESHSPCQFYGVTCDQTSGGVIGISLSNASLSGTISSSFSLLS----QLRTLELG 100
Query: 197 SHTPGVTGEADTGNMTSIE 141
+++ T A N T+++
Sbjct: 101 ANSISGTIPAALANCTNLQ 119
>02_05_0398 -
28644632-28644889,28644997-28645032,28645101-28645364,
28645439-28645522,28645718-28645798,28645888-28645965,
28646571-28646672,28646754-28646849,28646955-28647161,
28647246-28647493,28647577-28647773,28647997-28648112
Length = 588
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 321 PRRRIQFRHKHLQQHNDFEKNRKP 250
P+++ +FR HL+ H EK++KP
Sbjct: 357 PQQKQKFRSPHLELHKQSEKSKKP 380
>07_03_0290 -
16305703-16305990,16306119-16306307,16306386-16306419,
16307406-16307533,16307571-16307600,16307821-16307841,
16308467-16308537,16309394-16309415
Length = 260
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 374 YIGTWQDTNAPSSSYXLGHDDVYNFDIS 291
Y G ++ NA S ++ LG DD + F IS
Sbjct: 68 YTGVYRCINARSCAWSLGRDDKHRFTIS 95
>03_01_0075 -
618917-618980,619752-619818,619874-620029,620237-620315,
620797-620961,621070-621147,621327-621391,621433-621517,
621864-621920,622303-622386,622568-622650,623104-623164,
623292-623357,623468-623595,623696-623741
Length = 427
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 461 LIFITRCYSFTVEVNR*PFIKYVFYCKN 378
L+F C S V+++ F+KY ++C N
Sbjct: 98 LLFAPNCESIRVDISEEKFLKYFWWCWN 125
>02_02_0666 -
12757555-12757688,12757968-12758029,12758156-12758223,
12758359-12758490,12759116-12759351,12759451-12759648,
12760123-12760213,12760566-12760710,12760837-12760955
Length = 394
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 184 PGV*LHISKYRKRTFCHDVKMKWLSVFFKIIVLLEMLMSKLY 309
PG+ HI + + CH K+ WL F+ I +++ S Y
Sbjct: 43 PGMEPHIPEIQSELTCHLNKVSWLPDFYAIPPQVQIASSMAY 84
>01_07_0312 +
42677752-42678561,42678701-42678910,42679597-42679704,
42679915-42680010,42680090-42680182,42680276-42680386,
42680482-42680514,42680592-42680642,42680960-42681037,
42681145-42681165
Length = 536
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 398 YVFYCKNW---YIGTWQDTNAPSSSYXLGHDDVYNFD 297
YV YCK+ Y WQ N S+ ++VYN +
Sbjct: 417 YVAYCKDMDSLYFEIWQRVNMQKKSFRDSLEEVYNLN 453
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 27.1 bits (57), Expect = 9.9
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 4 KYSVYVHFVGGTSTALPTPREAF*VSTITPPFKQEGARVRTKLDGGSIDVILP-VSASPV 180
+Y V F GG+ LP P ST T P G R + K G ++ + LP V
Sbjct: 243 RYEVGPFFAGGSMLRLPAPAN----STPTAP---TGGRKKNK-SGTALAIALPLVVILLA 294
Query: 181 TPGV*LHISKYRKRT 225
T + L + ++RKR+
Sbjct: 295 TVVICLSVQRWRKRS 309
>02_02_0631 -
12397517-12398452,12398693-12398819,12398971-12399154,
12399303-12399395,12400029-12400077,12400565-12400624,
12400689-12400730,12400840-12400992,12401075-12401206,
12401313-12401408,12401936-12402079,12402234-12402308,
12403896-12404021
Length = 738
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -1
Query: 356 DTNAPSSSYXLGHDDVYNFDISISNNTMILKKTESHFI-LTSWQNVRLRYLEM*SHTP 186
D N + Y GH Y F I T+ K E I +TSW + L L++ P
Sbjct: 321 DPNGLADPYVKGHLGPYRFQTKIHKKTLNPKWMEEFKIPVTSWAALNLLSLQVRDKDP 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,163
Number of Sequences: 37544
Number of extensions: 309442
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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