Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0149.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.050
SB_53506| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_49827| Best HMM Match : zf-C2H2 (HMM E-Value=7e-07)                 28   4.4  
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)                       27   7.6  
SB_47839| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 34.7 bits (76), Expect = 0.050
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = -1

Query: 389 YCKNWYIGTWQDTNAPS--SSYXLGHDDVYNFDISISNNTMILKKTESHFILTSWQNVRL 216
           Y  + +   W+D +  +  +S  L H D  + D+S + + ++L K     +L     +RL
Sbjct: 114 YFASMFETKWKDKHVITLKNSLLLFHLDRLDVDVSQTMDVLLLAKQCKLHVLKQLLEMRL 173

Query: 215 RYLEM*SHTPGVTGEADTGNMTSIEPPSSL 126
           R +EM SH+   T E     + S+EP +SL
Sbjct: 174 RDIEMMSHSKPGTHEV---KVISVEPDASL 200


>SB_53506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 118 VRTKLDGGSIDVILPVSASPVTPGV 192
           +R  +DGG  DVI PV  SP +  +
Sbjct: 34  LRNMMDGGDFDVIAPVGNSPYSSNI 58


>SB_49827| Best HMM Match : zf-C2H2 (HMM E-Value=7e-07)
          Length = 279

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 284 WRCLCRNCIRRRGLXDKTKKVHSYLAMYRCTNFCNK 391
           W  +CR  +RR+       ++H+    YRC  FC+K
Sbjct: 229 WCSVCRKKLRRKQYLKAHLRIHTKEMPYRC-RFCSK 263


>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
          Length = 987

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 275 LCCWRCLCRNC 307
           LCC RC CR+C
Sbjct: 434 LCCCRCFCRSC 444


>SB_47839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +2

Query: 50  SPPR-EKRFKSQRLPHLSNKKEPASE 124
           +PPR +KRF S++ P +SNK + A++
Sbjct: 200 NPPRTDKRFFSKKAPKMSNKAKAAAK 225


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 215  RYLEM*SHTPGVTGEADTGNMTSIEPPSSLVLTRAPS 105
            +YL+  +    +TG   T N+T+  PP+    T +P+
Sbjct: 2487 QYLDSSTQNSPLTGPMRTSNLTNTHPPTDPTATESPA 2523


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,662,082
Number of Sequences: 59808
Number of extensions: 347435
Number of successful extensions: 1017
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)