Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0149.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    29   2.2  

>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -1

Query: 512 TPRGPTTSYFANYNFAGLIFITRCYSFTVEVNR*PFIKYVFYCKNWYIGTWQDTNAPSSS 333
           T R     YF  +N++G +  T C    V+    P      Y  NWY  +  DTN  +S 
Sbjct: 150 TARNLMLQYFKRFNYSGPLPSTGCIHLVVDRLVLPPDLIRDYYVNWYKFSDDDTNDQNSQ 209

Query: 332 Y 330
           +
Sbjct: 210 F 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,549
Number of Sequences: 27780
Number of extensions: 270820
Number of successful extensions: 733
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)