Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0149.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.38 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   4.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   6.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 47  RSPPREKRFKSQRLPHLSNKKEPASEL 127
           R  PR  RFKS     LSNK++ + EL
Sbjct: 66  RDFPRSHRFKSLPRCQLSNKRDRSREL 92


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +2

Query: 254 FLFFSKS--LCCWRCLCRNCIRRRGLXDKTKK 343
           + F+S    L  WR  CR C + R   D + +
Sbjct: 359 YAFYSADFRLAFWRLTCRKCFKSRTNLDPSNR 390


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 279 HNDFEKNRKPFHLNV 235
           +N++  N KP H N+
Sbjct: 324 YNNYNNNYKPLHYNI 338


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 279 HNDFEKNRKPFHLNVMAK 226
           HN+ EKNR+    N + K
Sbjct: 53  HNELEKNRRAHLRNCLEK 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,696
Number of Sequences: 438
Number of extensions: 3378
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)