Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0148.Seq
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   8.4  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   8.4  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   8.4  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 254 SNITAPYMRYVCVRDN 207
           +N+T    +YVCVRDN
Sbjct: 28  ANVTLESDKYVCVRDN 43


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +3

Query: 90   KYDLFVGSQATDFGEALA--RHDEF*K*PNFFLRALTKLRLIITHTHISH 233
            +YDL  G+   DF EA+   R  E     N  L     L + +   H SH
Sbjct: 885  EYDLITGTSEDDFSEAMTFIRERELLYGENSLLSRFAPLVVELCSNHKSH 934


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 275 KKLHNLHSNITAPYMRYVCVRDNK 204
           KK+  L  N + PY+++ C  ++K
Sbjct: 19  KKIRKLGDNFSLPYLKFDCDHNDK 42


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 272 KLHNLHSNITAPYMRY 225
           KL N HS IT PY R+
Sbjct: 457 KLQNNHSQITFPYKRH 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,277
Number of Sequences: 5004
Number of extensions: 30145
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)