Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0148.Seq
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0229 + 13995610-13995844,13996391-13996445,13998126-139982...    31   0.51 
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984...    27   6.3  
04_04_0695 + 27318827-27320047                                         27   8.4  
03_06_0246 + 32622793-32622804,32622883-32623057,32623395-326236...    27   8.4  

>01_03_0229 +
           13995610-13995844,13996391-13996445,13998126-13998211,
           13999484-13999671,14000111-14000169,14000618-14000646,
           14000742-14001138,14001569-14002028
          Length = 502

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = -2

Query: 289 FSTLLK-NYIICIVTLLHRICDMCVCVIIRRNFVSALRKK-LGYF*NSSCLASA 134
           F +LL+ N I C+  L+ R+ D  +C+ +  NF+ ++ K  LG F +  C+ SA
Sbjct: 81  FGSLLQCNIIFCL--LISRVMDDTICITVCMNFIISIFKSILGAF-SLDCIGSA 131


>07_03_0739 -
           21096684-21096742,21096822-21097076,21097206-21098498,
           21098616-21098688
          Length = 559

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +3

Query: 6   PRGGRGRHLVFEADADADEKLTKA 77
           P GGR R  V EA+AD D   TKA
Sbjct: 283 PSGGRIRSGVTEANADGDSVATKA 306


>04_04_0695 + 27318827-27320047
          Length = 406

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 253 VTLLHRICDMCVCVIIRRNFVSALRKKLG 167
           + LLH +  + V  ++RRN +  LR++LG
Sbjct: 255 IGLLHELLGLMVHKMVRRNAIRLLREELG 283


>03_06_0246 +
           32622793-32622804,32622883-32623057,32623395-32623659,
           32624594-32624693,32625076-32625125,32625239-32625293,
           32625742-32625774
          Length = 229

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = -1

Query: 431 KXNSYIYFPYL-VPVTQ------VLYELITRPVNVA*LLVNIYIYLFYLGR*VEFFNASK 273
           K  S+  F YL VP+T       ++YE ++ P  +A  L+++ +   YL +    FN   
Sbjct: 133 KTRSFATFQYLLVPITSQYWKAILVYENLSNPYGIAGTLLHVQVSQSYLPKPKFIFNGGH 192

Query: 272 KLHNLHSNITAPYMRYVCVRDNKT 201
           +L    S     +M    + D  T
Sbjct: 193 ELWEWRSICGCGHMDSQPLNDTTT 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,065,466
Number of Sequences: 37544
Number of extensions: 166381
Number of successful extensions: 317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)