Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0148.Seq
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52118| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23)                48   6e-06
SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)                 47   1e-05
SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.043
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_2627| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.5  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_36731| Best HMM Match : F5_F8_type_C (HMM E-Value=0.74)             27   8.6  

>SB_52118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 25/49 (51%), Positives = 35/49 (71%)
 Frame = +3

Query: 12  GGRGRHLVFEADADADEKLTKAEIIDKYDLFVGSQATDFGEALARHDEF 158
           G   +HL+ E D + D  LTK EI+D ++ FVGS+A +FG+AL RH+EF
Sbjct: 204 GAEAQHLINEVDKNEDGMLTKDEIMDNFEKFVGSRAAEFGQALNRHEEF 252


>SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23)
          Length = 308

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +3

Query: 24  RHLVFEADADADEKLTKAEIIDKYDLFVGSQATDFGEALARHD 152
           +HLV  AD ++D KLT  EI   Y +FVGS+ATD+G AL + +
Sbjct: 265 KHLVSSADDNSDGKLTIEEIEKNYAVFVGSEATDYGRALPKEE 307


>SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)
          Length = 234

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
 Frame = +3

Query: 24  RHLVFEADADADEKLTKAEIIDKYDLFVGSQATDFGEAL--ARHDEF 158
           +HL+  +D +AD  L   EI+  +DLFVGS+ATD GE L   +HDEF
Sbjct: 188 KHLIDGSDENADGDLQLDEILLHWDLFVGSKATDHGETLRKMKHDEF 234


>SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 34.7 bits (76), Expect = 0.043
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 39  EADADADEKLTKAEIIDKYDLFVGSQATDFGEALAR 146
           +   + D  LT  EI+++Y+LF GS+AT++G  L +
Sbjct: 252 DGSLNKDNFLTVDEIMERYELFAGSRATNYGNMLKK 287


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = -2

Query: 286 STLLKNYIICIVTLLHRICDMCVCVIIRRN 197
           ST+++  + C+V LL+ + +  VC++++RN
Sbjct: 627 STVIRLTLSCLVFLLNVVGNTMVCIVVKRN 656


>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 486 NINVFSRVMDVY*IYVCV*XKFLHLFPLSGTCNTSSLRTYHETS 355
           NI V +  + VY   +CV   FLH +  +   NT  L  YH  S
Sbjct: 10  NICVNTDFLHVYHNNICVNTDFLHAYHNNICVNTDFLHAYHTAS 53


>SB_2627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -2

Query: 259 CIVTLLHRICDMCVCVIIRRNFVSALRKKLGYF*NSSCLASASPKSVACEPTKRS 95
           CI T L   CD+C C     NF+  +R        +SC A+    S+     KR+
Sbjct: 236 CIATYLANFCDLCSC-----NFIHVVRDAQFLLTLTSCTANQFLYSLRMPTFKRA 285


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 388  HKFFTNLSRDQLTWRD 341
            HKFF ++S D  TW+D
Sbjct: 4581 HKFFISVSNDSKTWQD 4596


>SB_36731| Best HMM Match : F5_F8_type_C (HMM E-Value=0.74)
          Length = 189

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 388 HKFFTNLSRDQLTWRD 341
           HKFF ++S D  TW+D
Sbjct: 24  HKFFISVSNDSKTWQD 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,183,964
Number of Sequences: 59808
Number of extensions: 223782
Number of successful extensions: 377
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)