Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0148.Seq
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    54   4e-08
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    54   4e-08
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    29   1.4  
U38378-3|AAA79750.2|  335|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U38378-2|AAR12974.1|  403|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical p...    27   10.0 

>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
           protein M03F4.7a protein.
          Length = 314

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 26/43 (60%), Positives = 30/43 (69%)
 Frame = +3

Query: 24  RHLVFEADADADEKLTKAEIIDKYDLFVGSQATDFGEALARHD 152
           RHLV  AD + D KL   EI+  YD FVGSQATD+GE L +HD
Sbjct: 268 RHLVGIADDNKDGKLNLDEIVAHYDTFVGSQATDYGEQLQKHD 310


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
           protein protein.
          Length = 314

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 26/43 (60%), Positives = 30/43 (69%)
 Frame = +3

Query: 24  RHLVFEADADADEKLTKAEIIDKYDLFVGSQATDFGEALARHD 152
           RHLV  AD + D KL   EI+  YD FVGSQATD+GE L +HD
Sbjct: 268 RHLVGIADDNKDGKLNLDEIVAHYDTFVGSQATDYGEQLQKHD 310


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 270 FFRSVEKFNLPT*IK*ININIY*QSRHVNWSRDK-FVKNLCYRYQIREI 413
           F   +  F+LP     INI+I   + HVNW   K  +K L  ++ + EI
Sbjct: 203 FITVILTFSLPITALYINISIPRSTSHVNWKIQKQLLKRLVIQFAVHEI 251


>U38378-3|AAA79750.2|  335|Caenorhabditis elegans Hypothetical
           protein R11F4.2a protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 464 LWMYIKYMYVYKXNSYIYFPYLVPVTQVLYELI 366
           LW Y+ +      ++Y ++     VT VLY L+
Sbjct: 261 LWEYVAFQSTQTGDAYAFYETCTDVTSVLYILV 293


>U38378-2|AAR12974.1|  403|Caenorhabditis elegans Hypothetical
           protein R11F4.2b protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 464 LWMYIKYMYVYKXNSYIYFPYLVPVTQVLYELI 366
           LW Y+ +      ++Y ++     VT VLY L+
Sbjct: 261 LWEYVAFQSTQTGDAYAFYETCTDVTSVLYILV 293


>Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 223 TYRIYGAVMLLCKLCNFLEALKNSTYL 303
           T  ++G V  L  +CNF + +K S +L
Sbjct: 33  TIAVFGVVASLILICNFRKQMKESVFL 59


>Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 223 TYRIYGAVMLLCKLCNFLEALKNSTYL 303
           T  ++G V  L  +CNF + +K S +L
Sbjct: 33  TIAVFGVVASLILICNFRKQMKESVFL 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,088,439
Number of Sequences: 27780
Number of extensions: 164207
Number of successful extensions: 383
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)