Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0147.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    26   0.21 
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    26   0.21 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.48 
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    23   1.5  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    23   1.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.0  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   6.0  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 296 YFKFYIVPVLLLSLYNLCR 240
           YF FYI    LLS+Y+L R
Sbjct: 57  YFSFYITSYTLLSVYSLFR 75


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 296 YFKFYIVPVLLLSLYNLCR 240
           YF FYI    LLS+Y+L R
Sbjct: 57  YFSFYITSYTLLSVYSLFR 75


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
 Frame = -3

Query: 287 FYIVPVLLLSLYNLCRQSITLVFI*KVFFFYLFNFIYIKIFCK*SFVYFYLCIKLF---- 120
           +Y     ++   +L    + ++ +   +F+Y F    + +       YFY    LF    
Sbjct: 213 YYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAF 272

Query: 119 -------LILRCVYKY---LFIY*CII*VAMSFL--PV*KSLSFSFYLLKN 3
                  L L C+Y +   L I  CI     +F+  P     +FS Y LK+
Sbjct: 273 IIFTMHLLFLLCIYYFYCALIILLCIYYFCRAFIIFPTHFYCAFSLYPLKS 323



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 293 FKFYIVPVLLLSLYNLCRQSI 231
           + FY   ++LL +Y  CR  I
Sbjct: 286 YYFYCALIILLCIYYFCRAFI 306


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -3

Query: 269 LLLSLYNLCRQSITLVFI*KVFFFYLFNFIYIKIFC 162
           +L+ L+N  RQ    +   +++F++ F F+ ++  C
Sbjct: 302 ILIQLFNSLRQMKNNLE--RIYFYWSFGFLIVRTVC 335


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -3

Query: 269 LLLSLYNLCRQSITLVFI*KVFFFYLFNFIYIKIFC 162
           +L+ L+N  RQ    +   +++F++ F F+ ++  C
Sbjct: 302 ILIQLFNSLRQMKNNLE--RIYFYWSFGFLIVRTVC 335


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 288 FKVLYIAVRATHRNKPKRNAKLSL 359
           + VL    R TH N+P R AKL L
Sbjct: 343 YGVLEEYTRTTHPNEPGRFAKLLL 366


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 206 FFFYLFNFIYIKIFCK*SFVYFYLCIKLFLI 114
           F F L    Y+KI+ K  +  F   +K F+I
Sbjct: 16  FLFLLICDSYLKIYHKEKYRKFCRILKYFII 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,977
Number of Sequences: 336
Number of extensions: 2433
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)