Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0147.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    29   0.52 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   8.4  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   8.4  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 233 ITLVFI*KVFFFYLFNFIYIKIFCK 159
           ITL+FI  +F FY+  FI++++F +
Sbjct: 292 ITLIFISFLFSFYVLIFIWVRLFAR 316


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 242 RQSITLVFI*KVFF-FYLFNFIYIKIFCK*SFVYFYLCI 129
           ++SI  + + +V   FYLF  + + I+   SFV++  CI
Sbjct: 188 KKSIVTILLNEVLHPFYLFQAVSVLIWLCDSFVFYSCCI 226


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 236 IVYIDYIMIITKQVQCRI*STIHSGAGD 319
           I+YI ++  IT+   C+  + +HS  G+
Sbjct: 9   ILYIAFLFAITRHAFCKAVNLVHSPEGE 36


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
 Frame = -2

Query: 552 WGKVCPKMPK-NLAYKPTYTKTXQLSRLTRV--------KL--QLCEQDTVFWSVVFTSC 406
           W K C    + +L +   Y +T ++  ++ +        KL   L   DTV WS V  SC
Sbjct: 339 WAKTCMYFTRGSLTFAEAYKRTGRILNISVIPSDVHSPPKLINYLTSPDTVIWSAVIASC 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,692
Number of Sequences: 5004
Number of extensions: 38104
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)