Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0147.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0927 - 7784564-7784656,7785182-7785225,7785946-7785970,778...    27   8.6  

>07_01_0927 -
           7784564-7784656,7785182-7785225,7785946-7785970,
           7786357-7786497,7786590-7786619,7786686-7786762,
           7786816-7786855,7787055-7787122,7787782-7789864
          Length = 866

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 501 YTKTXQLSRLTRVKLQLCEQDTVFWSVVFTSC 406
           Y K  Q  R  RV   + E+D V W++   +C
Sbjct: 157 YAKCGQFERARRVFGAMAERDAVSWNIAIGAC 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,555,036
Number of Sequences: 37544
Number of extensions: 199912
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)