Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0147.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.75 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.75 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   9.2  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   9.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   9.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -3

Query: 287 FYIVPVLLLSLYNLCRQSITLVFI*KVFFFYLFNFIYIKIFCK*SFVYFYLCIKLFLIL 111
           F++ P  +L L  +  +  T  F+    F +L +    K+F    F++ Y+   +F+IL
Sbjct: 180 FWVTPFTVLPLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIIL 238


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -3

Query: 287 FYIVPVLLLSLYNLCRQSITLVFI*KVFFFYLFNFIYIKIFCK*SFVYFYLCIKLFLIL 111
           F++ P  +L L  +  +  T  F+    F +L +    K+F    F++ Y+   +F+IL
Sbjct: 180 FWVTPFTVLPLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIIL 238


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 8  SINKTRKIKIFIQEERTSPLK 70
          SINK RKI+    EE    LK
Sbjct: 22 SINKLRKIESVCAEENGIDLK 42


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 330 CFDASPAPLCIVL*ILHCTC 271
           C +  P PLCI +    C C
Sbjct: 54  CPNVVPKPLCIKICAPGCVC 73


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 330 CFDASPAPLCIVL*ILHCTC 271
           C +  P PLCI +    C C
Sbjct: 54  CPNVVPKPLCIKICAPGCVC 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,941
Number of Sequences: 438
Number of extensions: 3012
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)