Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0146.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F307C3 Cluster: UPI0000F307C3 related cluster; n...    35   1.2  
UniRef50_Q553D6 Cluster: Putative uncharacterized protein; n=2; ...    33   4.7  
UniRef50_Q4FHG9 Cluster: NADH dehydrogenase subunit 2; n=2; Aphi...    33   4.7  
UniRef50_Q6ZTU1 Cluster: CDNA FLJ44225 fis, clone THYMU3006168; ...    32   6.2  
UniRef50_A6PE92 Cluster: Putative uncharacterized protein precur...    32   8.2  
UniRef50_A0CQ54 Cluster: Chromosome undetermined scaffold_24, wh...    32   8.2  

>UniRef50_UPI0000F307C3 Cluster: UPI0000F307C3 related cluster; n=1;
           Bos taurus|Rep: UPI0000F307C3 UniRef100 entry - Bos
           Taurus
          Length = 422

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 86  SLD*ARDHRTTFLYLDKYSAIHAHSQRPAIYVYTHTLSRIIIFIMND 226
           S+  AR H  T LY   +   H H+Q+   + +THT +   I+I  D
Sbjct: 212 SMQCARQHGMTSLYFLSHVCAHTHTQKHTKHTHTHTYTHTHIYIYMD 258


>UniRef50_Q553D6 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 462

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 244 KETKTGVIFI-KVRNK*QNTIRSDASNDRKVLR*SL-YFINEIHNN*SISQHLSKFRRFP 417
           KE +  VIF     NK  N   +D++ND+++ R    Y IN   N   I    SKF  FP
Sbjct: 89  KEIEQLVIFYDNNNNKNNNNENNDSNNDKELKRSEYNYLINNFKNLKRIYSESSKFAYFP 148

Query: 418 QTRFXDLTVTNILXCK 465
             ++ +  V     CK
Sbjct: 149 SYQYYNDLVDYNKICK 164


>UniRef50_Q4FHG9 Cluster: NADH dehydrogenase subunit 2; n=2;
           Aphidomorpha|Rep: NADH dehydrogenase subunit 2 -
           Daktulosphaira vitifoliae (grape phylloxera)
          Length = 327

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = -3

Query: 365 ISLMKYKLYLKTLRSLLASLRIVFCYLFLTFIKITP-VLVSFLV 237
           +SLM + L+L    S++  L  + C+L LT+ KI+P +L+S+L+
Sbjct: 99  LSLMPFHLWLP---SMIEGLNWMVCFLMLTWQKISPMILISYLI 139


>UniRef50_Q6ZTU1 Cluster: CDNA FLJ44225 fis, clone THYMU3006168;
           n=2; Homo sapiens|Rep: CDNA FLJ44225 fis, clone
           THYMU3006168 - Homo sapiens (Human)
          Length = 262

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 107 HRTTFLYLDKYSAIHAHSQRPAIYVYTHTLSRIIIFIMN 223
           HR T++Y+  Y  IH ++    I+++TH  S  I  +MN
Sbjct: 202 HRYTYVYIHIYICIHMYTH---IHIHTHNFSLTICLLMN 237


>UniRef50_A6PE92 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella sediminis HAW-EB3|Rep:
           Putative uncharacterized protein precursor - Shewanella
           sediminis HAW-EB3
          Length = 206

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 326 RSLLASLRIVFCYLFLTFIKITPVLVSFLVQFHHH 222
           R+LL  L IVFCY+F++        VSF  Q H +
Sbjct: 6   RNLLLGLAIVFCYIFVSIYSAKLNDVSFATQAHQY 40


>UniRef50_A0CQ54 Cluster: Chromosome undetermined scaffold_24, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_24,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 444

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -3

Query: 344 LYLKTLRSL--LASLRIVFCYLFLTFIKITPVLVSFLVQFHHHSL 216
           L+L+T  SL  +    I+F YLFL +++ T  + +F++ +  +SL
Sbjct: 301 LFLRTRTSLYFVPKFTIIFYYLFLWYVRSTSKITTFILDYGFYSL 345


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,577,904
Number of Sequences: 1657284
Number of extensions: 7025642
Number of successful extensions: 13020
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13016
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)