Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0146.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.0  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   6.2  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.2  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 107 DHVPNLTSCCCYISLTI*YHVNM 39
           D VP +T C  +  +T  YH N+
Sbjct: 147 DGVPFVTQCPIHPGMTFRYHFNV 169


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 217 YKNDYST*CMGIYIYSRSLGVRVY 146
           +KN Y    + I +YS S+G   Y
Sbjct: 130 FKNAYFQLVLSISVYSSSVGYTQY 153


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 423 CLGKSSKFR*VLRYGLIVVYFINEIQTLP 337
           C G +S+   + +   I  Y++NEI T+P
Sbjct: 304 CAGATSEAEKIAK---ICFYWLNEIPTMP 329


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 164 RPAIYVYTHTLSRIIIFIM 220
           RP+IY  + TL+   IFI+
Sbjct: 486 RPSIYFISKTLAESPIFII 504


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 164 RPAIYVYTHTLSRIIIFIM 220
           RP+IY  + TL+   IFI+
Sbjct: 486 RPSIYFISKTLAESPIFII 504


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,423
Number of Sequences: 336
Number of extensions: 2005
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)