Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0146.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    25   8.4  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   8.4  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   8.4  

>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 328 KVLR*SLYFINEIHNN*SISQHLSKFRRFPQTRF 429
           K+   S+Y +NE+H +  +S H++  + F   +F
Sbjct: 198 KLYNESIYAMNEMHIHRGLSPHMAVLKVFVNDKF 231


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 344 LYLKTLRSLLASLRIVFCYLFLTFIKITPVLVSFLVQFHH 225
           L+L T+ SL  S+R  F   F        VL+ FL+  HH
Sbjct: 195 LFLMTVASL-PSVRRKFFEWFFVLHHTCSVLIIFLIWLHH 233


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 362 SLMKYKLYLKTLRSLLASLRIVFCYLFLTFIK 267
           SL K++  L  L S  A L I F Y  + FI+
Sbjct: 32  SLNKFQYTLPLLISNFAGLGIAFIYCLIAFIR 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,419
Number of Sequences: 5004
Number of extensions: 32928
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)