Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0146.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_380| Best HMM Match : AAA (HMM E-Value=0.14)                        29   2.8  
SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)                 28   3.7  

>SB_380| Best HMM Match : AAA (HMM E-Value=0.14)
          Length = 508

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 308 LRIVFCYLFLTFIKITPVLVSFL 240
           L ++FC + LT+ +ITPV   FL
Sbjct: 365 LTVIFCIIELTYTRITPVQCCFL 387


>SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)
          Length = 407

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 116 TFLYLDKYSAIHAHSQRPAIYVYTHTLSRIII 211
           T + LD+Y A+H H + PA+ V T  + +++I
Sbjct: 170 TLISLDRYLALHLHLRYPAV-VTTERILKVLI 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788,545
Number of Sequences: 59808
Number of extensions: 220524
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)