Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0146.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    32   0.96 
BC036447-1|AAH36447.1|  686|Homo sapiens rhophilin, Rho GTPase b...    29   6.8  
AL831950-1|CAD38597.1|  657|Homo sapiens hypothetical protein pr...    29   6.8  
AJ347750-1|CAC87939.1|  686|Homo sapiens p76RBE protein protein.       29   6.8  
AF423421-1|AAQ04062.1|  686|Homo sapiens rhophilin-like Rho-GTPa...    29   6.8  

>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 107 HRTTFLYLDKYSAIHAHSQRPAIYVYTHTLSRIIIFIMN 223
           HR T++Y+  Y  IH ++    I+++TH  S  I  +MN
Sbjct: 202 HRYTYVYIHIYICIHMYTH---IHIHTHNFSLTICLLMN 237


>BC036447-1|AAH36447.1|  686|Homo sapiens rhophilin, Rho GTPase
           binding protein 2 protein.
          Length = 686

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +2

Query: 128 LDKYSAIHAHSQRPAIYVYTHTLSRIIIFIMNDDEIEREKKLKQELFL*RLGIN-NRIQS 304
           LD  S++H  S   ++ +   T S I + I +DD+ ++ KK+ ++L     G N NR +S
Sbjct: 594 LDSTSSMHNKSATYSVGMQK-TYSMICLAIDDDDKTDKTKKISKKLSFLSWGTNKNRQKS 652

Query: 305 AVT 313
           A T
Sbjct: 653 AST 655


>AL831950-1|CAD38597.1|  657|Homo sapiens hypothetical protein
           protein.
          Length = 657

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +2

Query: 128 LDKYSAIHAHSQRPAIYVYTHTLSRIIIFIMNDDEIEREKKLKQELFL*RLGIN-NRIQS 304
           LD  S++H  S   ++ +   T S I + I +DD+ ++ KK+ ++L     G N NR +S
Sbjct: 565 LDSTSSMHNKSATYSVGMQK-TYSMICLAIDDDDKTDKTKKISKKLSFLSWGTNKNRQKS 623

Query: 305 AVT 313
           A T
Sbjct: 624 AST 626


>AJ347750-1|CAC87939.1|  686|Homo sapiens p76RBE protein protein.
          Length = 686

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +2

Query: 128 LDKYSAIHAHSQRPAIYVYTHTLSRIIIFIMNDDEIEREKKLKQELFL*RLGIN-NRIQS 304
           LD  S++H  S   ++ +   T S I + I +DD+ ++ KK+ ++L     G N NR +S
Sbjct: 594 LDSTSSMHNKSATYSVGMQK-TYSMICLAIDDDDKTDKTKKISKKLSFLSWGTNKNRQKS 652

Query: 305 AVT 313
           A T
Sbjct: 653 AST 655


>AF423421-1|AAQ04062.1|  686|Homo sapiens rhophilin-like Rho-GTPase
           binding protein protein.
          Length = 686

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +2

Query: 128 LDKYSAIHAHSQRPAIYVYTHTLSRIIIFIMNDDEIEREKKLKQELFL*RLGIN-NRIQS 304
           LD  S++H  S   ++ +   T S I + I +DD+ ++ KK+ ++L     G N NR +S
Sbjct: 594 LDSTSSMHNKSATYSVGMQK-TYSMICLAIDDDDKTDKTKKISKKLSFLSWGTNKNRQKS 652

Query: 305 AVT 313
           A T
Sbjct: 653 AST 655


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,079,423
Number of Sequences: 237096
Number of extensions: 983227
Number of successful extensions: 1122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)