Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0146.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70850-4|AAB09125.3|  483|Caenorhabditis elegans Amino acid tran...    30   1.1  
AL117202-2|CAB55092.1|  302|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U70850-4|AAB09125.3|  483|Caenorhabditis elegans Amino acid
           transporter protein 8 protein.
          Length = 483

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 137 YSAIHAHSQRPAIYVYTHTLSRIIIFIMNDDE 232
           +S IH  +  P + V+ HTL+ II   M D +
Sbjct: 331 FSLIHVDNDSPRVSVFFHTLTSIIFAFMGDTD 362


>AL117202-2|CAB55092.1|  302|Caenorhabditis elegans Hypothetical
           protein Y47D3A.2 protein.
          Length = 302

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 320 LLASLRIVFCYLFLTFIKITPVLVSFLVQFHHHS 219
           L+ S   + CY+ L F+ I  +   F   F +HS
Sbjct: 236 LVKSSNFLHCYIHLPFLNIQEIATIFKPDFSNHS 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,667,129
Number of Sequences: 27780
Number of extensions: 174254
Number of successful extensions: 353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)