Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0146.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains ...    27   7.0  
At3g24535.1 68416.m03081 expressed protein ; expression supporte...    27   9.3  

>At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains
           similarity to NAD kinase [Homo sapiens]
           gi|20070086|gb|AAM01195; contains Pfam domain, PF01513:
           ATP-NAD kinase
          Length = 985

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 384 YGLIVVYFINEIQTLP*NLTIVTCVTADCILLFIPNLYK 268
           +G +  ++I +   L   +  V C+  D ++L   NL+K
Sbjct: 725 FGFVQTFYIQDTSDLHERVDFVACLGGDGVILHASNLFK 763


>At3g24535.1 68416.m03081 expressed protein ; expression supported
           by MPSS
          Length = 188

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 62  LKKCNNNNSLD*ARDHRTTFLYLDKYSAIHAHSQ-RPAIYVYTHTLSRIIIFIMNDDE 232
           L K  NN S +   DH  + +     S+IH   Q +P  YV T+  S +   I + DE
Sbjct: 34  LPKTPNNTSTNINNDHPNSNIITSSSSSIHKQFQPKPKDYVTTNKASSLQPRIGDRDE 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,768,934
Number of Sequences: 28952
Number of extensions: 147622
Number of successful extensions: 276
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)