Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0145.Seq
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   1.4  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   4.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    24   7.6  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 272 LLNSRHDTHTHFRNNNVYELSNDNRAAVQ 186
           +LN++ DT     N+N+  L   NR A Q
Sbjct: 581 ILNAKDDTRIGTTNSNLLRLKRSNRTAAQ 609


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 146 FM*WLSIIIHQRMXEQLLYCH 208
           F+ +L+I +H  +  +L+YCH
Sbjct: 66  FVYYLAITLHTSLLTKLIYCH 86


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 263 SRHDTHTHFRNNNVYELSNDNRAAVQXFF 177
           ++HD     RN NV E  ND   A Q FF
Sbjct: 877 TKHDILAQ-RNRNVSEKMNDLENAAQKFF 904


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,235,861
Number of Sequences: 5004
Number of extensions: 20244
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)