Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0145.Seq
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357...    27   5.5  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     26   9.5  

>01_07_0242 +
           42234217-42234320,42234708-42235029,42235377-42235778,
           42235921-42236265,42236785-42236854,42237098-42237173,
           42237309-42237459
          Length = 489

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = -1

Query: 356 LXAXYR*AFPL-ISCKFNSSSTVVYKX-----IXLLNSRHDTHTHFRNNNV 222
           L + YR A P     KF +  TVV +      + +++S HDTHT   ++N+
Sbjct: 413 LWSPYRLAHPHGQKAKFGACKTVVKRIKSGFDVIIMSSSHDTHTSLIDHNI 463


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 266  NSRHDTHTHFRNNNVYELSNDNRAAVQXF-FDE*LLTAIT 150
            N+R +T  H ++NN +E +N  R  V+    D  L+T +T
Sbjct: 3609 NNRSNTLEHGKDNNTFEHTNSIRGEVEWLEKDNNLVTLLT 3648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,000,755
Number of Sequences: 37544
Number of extensions: 100817
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)