Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0145.Seq
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42101| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)           26   9.8  
SB_36759| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)           26   9.8  
SB_6138| Best HMM Match : 7tm_1 (HMM E-Value=2e-19)                    26   9.8  

>SB_42101| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)
          Length = 307

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 161 SIIIHQRMXEQLLYCHLIIRRHYYF*SVCVYHG 259
           S ++  R  E  LYCH++I R ++  +V +Y G
Sbjct: 180 STVLPYRYIEVPLYCHIVISR-FHCIAVSLYRG 211


>SB_36759| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)
          Length = 357

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 161 SIIIHQRMXEQLLYCHLIIRRHYYF*SVCVYHG 259
           S ++  R  E  LYCH++I R ++  +V +Y G
Sbjct: 184 STVLPYRYIEVPLYCHIVISR-FHCIAVSLYRG 215


>SB_6138| Best HMM Match : 7tm_1 (HMM E-Value=2e-19)
          Length = 494

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 161 SIIIHQRMXEQLLYCHLIIRRHYYF*SVCVYHG 259
           S ++  R  E  LYCH++I R ++  +V +Y G
Sbjct: 417 STVLPYRYIEVPLYCHIVISR-FHCIAVSLYRG 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,698,016
Number of Sequences: 59808
Number of extensions: 136934
Number of successful extensions: 178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)