Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0145.Seq
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.74 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.9  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   6.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   9.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   9.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 335 AFPLISCKFNSSSTVVYKXIXLLNSRHDTHTHFRNNNVYELSNDN 201
           A  L +C+ NS+++ +       N+ ++ + +  NNN    +NDN
Sbjct: 213 AVVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDN 257


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +1

Query: 226 LLFLKCVCVSW 258
           L+F +C+ +SW
Sbjct: 458 LMFFECIAISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +1

Query: 226 LLFLKCVCVSW 258
           L+F +C+ +SW
Sbjct: 511 LMFFECIAISW 521


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 245 THFRNNNVYELSNDNR 198
           T+F+N+N+++L    R
Sbjct: 164 TNFKNSNIFQLKQHMR 179


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 95  IVSRLAYLI*FIGMYLYYVXTYFFK 21
           ++SR+ + I F    L Y  TY F+
Sbjct: 417 VISRIFFPIVFAFFNLAYWSTYLFR 441


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 95  IVSRLAYLI*FIGMYLYYVXTYFFK 21
           ++SR+ + I F    L Y  TY F+
Sbjct: 417 VISRIFFPIVFAFFNLAYWSTYLFR 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,447
Number of Sequences: 438
Number of extensions: 1394
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)