Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0144.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    25   0.64 
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    25   0.64 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.85 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.85 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.85 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.85 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.85 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.0  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   6.0  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   6.0  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.9  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +1

Query: 148 FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR---KLNRSVMRVN 279
           FGK   T   FFSD + D  +    D   Y L R   KL   + ++N
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCRLHYKLTSVMQKIN 248


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +1

Query: 148 FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR---KLNRSVMRVN 279
           FGK   T   FFSD + D  +    D   Y L R   KL   + ++N
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCRLHYKLTSVMQKIN 248


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 KPFSNEGKPLVVQFTVKHEQDID 323
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 KPFSNEGKPLVVQFTVKHEQDID 323
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 KPFSNEGKPLVVQFTVKHEQDID 323
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 KPFSNEGKPLVVQFTVKHEQDID 323
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 KPFSNEGKPLVVQFTVKHEQDID 323
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 337 YPPPQSMSCSCLTVNWTTKGLPSLLNGLTYGREHRTSHLQRFSNL 203
           YPPP S+    ++V   T G P    G    R+ R  +  +F  L
Sbjct: 213 YPPPGSLGSMGVSVPCGTSGNPLEWTGQVTVRKKRKPY-SKFQTL 256


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 112 FPTNHQETSPQRIH 71
           FP NH    P+++H
Sbjct: 41  FPLNHLNEEPEKLH 54


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 459 YKGKNHLIKKDIRCKGCVYT 518
           Y  +NH   K  +C  C YT
Sbjct: 248 YHLRNHAGSKPFQCNKCDYT 267


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 459 YKGKNHLIKKDIRCKGCVYT 518
           Y  +NH   K  +C  C YT
Sbjct: 6   YHLRNHAGSKPFQCNKCDYT 25


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 199 HPLGR*RTFQQSI*TFQILFLGAHCTPNCFPTN 101
           +P+G       S+  F ++FL   CT  C   N
Sbjct: 133 YPVGIVGVKNASLFIFDLIFLSFRCTKLCKEAN 165


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 117 IAFPRIIRKLLLKEYITIYRR*CQQADNDQYNSFHFRF 4
           I  P I+RK+L+K++     R     ++    +FH  F
Sbjct: 79  IRSPEILRKVLVKDFDKFTNRNIATNESADPLAFHTLF 116


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = -3

Query: 542 SQIRVYKMCVDTSFAADIFFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIWS 387
           ++ R   +C+   F A +F   M++    +   Y  GS+        N  WS
Sbjct: 183 TKTRASLICLLAWFIAALFTSPMLVIAEYKQLDYFDGSKVPACHTLANTFWS 234


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 274  PSLLNGLTYGREHRTSHLQRFSNL 203
            P L   + +GRE    H  + SNL
Sbjct: 1043 PYLFETVEFGREEGKEHHLKISNL 1066


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,289
Number of Sequences: 336
Number of extensions: 3710
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)