Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0144.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 123 1e-28
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 122 2e-28
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 118 4e-27
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 115 3e-26
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 63 1e-10
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 4.9
11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395... 28 4.9
09_04_0199 - 15533619-15534107,15534956-15535362,15535559-155358... 28 4.9
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 28 4.9
07_03_1437 + 26550104-26550310,26550409-26551170 28 6.5
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 6.5
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 27 8.6
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 123 bits (296), Expect = 1e-28
Identities = 56/96 (58%), Positives = 69/96 (71%), Gaps = 4/96 (4%)
Frame = +3
Query: 261 FSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKK 440
FSN+ K LV+QF+VKHEQ +DCGGGY+K+ ++QK G+TPY IMFGPDICG TKK
Sbjct: 94 FSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDICGYSTKK 153
Query: 441 VHVIFSYKGKNHLIKKDIRCK----GCVYTHFVHSD 536
VH IF+ KNHLIKKD+ C+ VYT +H D
Sbjct: 154 VHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPD 189
Score = 65.3 bits (152), Expect = 4e-11
Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Frame = +1
Query: 70 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 243
+VFF+EKF +D WES WV SE E G++ T+GK+ DPED KG++TSED RFYA+
Sbjct: 30 EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPED-KGIQTSEDYRFYAI 87
Query: 244 S 246
S
Sbjct: 88 S 88
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 122 bits (295), Expect = 2e-28
Identities = 54/87 (62%), Positives = 65/87 (74%)
Frame = +3
Query: 261 FSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKK 440
FS++ K LV+QF+VKHEQ +DCGGGY+K+ ++QK GETPY IMFGPDICG TKK
Sbjct: 101 FSSKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETPYSIMFGPDICGYATKK 160
Query: 441 VHVIFSYKGKNHLIKKDIRCKGCVYTH 521
VH I + GKNHLIKKD+ CK TH
Sbjct: 161 VHAILTKNGKNHLIKKDVPCKTDQLTH 187
Score = 54.0 bits (124), Expect = 9e-08
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 12/73 (16%)
Frame = +1
Query: 70 DVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDD----------KGLK 213
+VFF+EKF DD WE WV SE G++ T+GK++ D +D G++
Sbjct: 26 EVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHTSGKWYGDADDKGMCEVTLLLCAGIQ 84
Query: 214 TSEDARFYALSRK 252
TSED RFYA+S K
Sbjct: 85 TSEDYRFYAISAK 97
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 118 bits (284), Expect = 4e-27
Identities = 48/90 (53%), Positives = 69/90 (76%)
Frame = +3
Query: 252 VKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPG 431
+ FSN+G+ LV+Q+++K EQDI+CGGGY+K+ + QK G+TPY +MFGPDICG
Sbjct: 89 IPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDICGTQ 148
Query: 432 TKKVHVIFSYKGKNHLIKKDIRCKGCVYTH 521
TKK+H+I SY+G+N+ IKKD++C+ TH
Sbjct: 149 TKKLHLILSYQGQNYPIKKDLQCETDKLTH 178
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 243
+V FEE+F +D WES WV S+ E G FK TAG++ DP DDKG++T+ DAR +A+
Sbjct: 28 EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKGIQTTLDARHFAI 85
Query: 244 SRKL 255
S K+
Sbjct: 86 SAKI 89
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 115 bits (276), Expect = 3e-26
Identities = 48/88 (54%), Positives = 66/88 (75%)
Frame = +3
Query: 261 FSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKK 440
FSN+ + LVVQ+++K EQDI+CGG Y+K+ + QK G+TPY MFGPDICG TKK
Sbjct: 92 FSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPDICGDQTKK 151
Query: 441 VHVIFSYKGKNHLIKKDIRCKGCVYTHF 524
+H+I SY+G+N+ IKKD++C+ THF
Sbjct: 152 LHLILSYQGQNYPIKKDLKCETDKLTHF 179
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Frame = +1
Query: 61 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARF 234
++ +V FEE+F DD W S WV S+ E G FK TAG + DP DD+G++T+ DA+
Sbjct: 25 VSGEVIFEERF-DDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRGIQTTSDAKH 82
Query: 235 YALSRK 252
+A+S K
Sbjct: 83 FAISAK 88
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 63.3 bits (147), Expect = 1e-10
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = +3
Query: 255 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICG 425
+P + + +V+QF V+ + ++CGG YLK D + K+ ETPY IMFGPD CG
Sbjct: 81 EPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPDKCG 140
Query: 426 PGTKKVHVIFSYK 464
T KVH I +K
Sbjct: 141 -STNKVHFILKHK 152
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -1
Query: 418 MSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGL 275
M GP ++ ++P S +Q + +++ +SC+CL T+KGL
Sbjct: 674 MLGPTVLV--LAPTRELASQIQDEAVKFGRSSRVSCTCL-YGGTSKGL 718
>11_06_0387 +
23038490-23038662,23039246-23039303,23039471-23039551,
23039640-23039675,23039821-23040060,23040155-23040293,
23041417-23041889
Length = 399
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 394 YGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLTYGR 242
Y SP + F S L ++ L +P MS ++W T+G+ S L+ L G+
Sbjct: 131 YDSSP-VDFVSDLGTRFLLHPSVLKMSQPPRILSWMTRGIASGLDTLFIGK 180
>09_04_0199 -
15533619-15534107,15534956-15535362,15535559-15535862,
15537061-15538397,15539463-15539727
Length = 933
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = -3
Query: 575 VKXELHRCCQVSQIRVYKMCVDTSFAADIFFDEMVLTLVTEDYVYLLGSRTTNV 414
++ EL++ + Q RVY + + T+ + +F L +++EDY ++L +N+
Sbjct: 211 IERELYKLMTM-QTRVYVVHMSTNIGSILFKKAKDLGMMSEDYAWILTDGISNI 263
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 465 GKNHLIKKDIRCKGCVYTH 521
G NHLIKKD+ C+ TH
Sbjct: 515 GNNHLIKKDVPCETDQLTH 533
>07_03_1437 + 26550104-26550310,26550409-26551170
Length = 322
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -1
Query: 361 SLQSKTLRYPPPQSMSCSCLTVNWTTKGLPS----LLNGL-TYGREHRTSHLQRFS 209
SL ++TL + PP + + L ++ KGL + L+G T GR H +S R S
Sbjct: 154 SLANETLAFLPPPVFNLTQLVASFQAKGLDADDMVTLSGAHTIGRSHCSSFADRLS 209
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 104 ESSGNFSSKNTSQFIEDNASKLTTTSTTA 18
ES+G SSK + E++ + TTTSTTA
Sbjct: 59 ESAGVSSSKKKRRIEEESPAATTTTSTTA 87
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = -3
Query: 584 SSFVKXELHRCCQVSQIRVYKMCVDTSFAADIFFDEMVLTLVTEDYVYLLGSRTTN-VRA 408
S + EL++ + Q RV+ + + ++ AA +F + ++++ +V+++ TN V +
Sbjct: 207 SEEISQELYKLMTM-QTRVFIVHMSSTLAASLFTKAKEVGMMSKGFVWIMTDGITNIVDS 265
Query: 407 EHNLIWSLSVHVLLLQFAVKDLEVSASTV--NVLFMFDSELD 288
+ L +QF V + E+ + T+ N F D+ D
Sbjct: 266 MSTSVVEAMNGALGIQFYVNNSELDSFTIGWNRRFQIDNPND 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,197
Number of Sequences: 37544
Number of extensions: 374728
Number of successful extensions: 993
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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