Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0144.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   5e-16
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                44   1e-04
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.043
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_45201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 36/63 (57%), Positives = 43/63 (68%)
 Frame = +1

Query: 73  VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRK 252
           V F EKF D SWE  WV S   G + GKFK TAGKF+ D E DKG++TSEDA+FY +S K
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGISAK 815

Query: 253 LNR 261
             +
Sbjct: 816 FEK 818



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = +3

Query: 255 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 344
           KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 818 KPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 354 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKK 488
           C L Q+    +TPY IMFGPD CG   +K+H IF +K  KN  I++
Sbjct: 28  CHLFQESFGDKTPYTIMFGPDKCGE-DRKLHFIFRHKNPKNGTIEE 72


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 331 PPQSMSCSCLTVNWTTKGLPSLLNG 257
           P +  SC CL V W T GLP L++G
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHG 453


>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 135 VLTVHPIAFPRIIRKLLLKEYI 70
           +LT H +  P++IRK+ LK+Y+
Sbjct: 73  LLTAHLVVAPKLIRKMPLKDYV 94


>SB_45201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
 Frame = +3

Query: 261 FSNEGK---PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEI-MFGPDICGP 428
           FS  GK    L++    K  +  DCG  + +  D K   +   GE PYE    G      
Sbjct: 283 FSESGKLKRHLMIHTGEKPHKCDDCGKRFTQSGDLKTHLRIHTGEKPYECDDCGKRFTLS 342

Query: 429 GTKKVHVIFSYKGKNHLIKKDIRCKGCVYTHFVHSDL 539
           G  K HV      K H  KK  +C  C  +   H+ L
Sbjct: 343 GNMKKHV------KIHSGKKPYKCDECGKSFTEHAYL 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,786,777
Number of Sequences: 59808
Number of extensions: 456777
Number of successful extensions: 1068
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)