Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0144.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   132   2e-31
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   132   2e-31
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    67   1e-11
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    28   4.4  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    28   4.4  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    28   4.4  
Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    27   7.7  
U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm recept...    27   7.7  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  132 bits (319), Expect = 2e-31
 Identities = 58/89 (65%), Positives = 69/89 (77%)
 Frame = +3

Query: 255 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGT 434
           K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPDICGP T
Sbjct: 78  KDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-T 136

Query: 435 KKVHVIFSYKGKNHLIKKDIRCKGCVYTH 521
           ++VHVI +YKG+N LIKK+I CK    TH
Sbjct: 137 RRVHVILNYKGENKLIKKEITCKSDELTH 165



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 31/67 (46%), Positives = 49/67 (73%)
 Frame = +1

Query: 61  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 240
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 241 LSRKLNR 261
            + K ++
Sbjct: 72  RAAKFDK 78


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  132 bits (319), Expect = 2e-31
 Identities = 58/89 (65%), Positives = 69/89 (77%)
 Frame = +3

Query: 255 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGT 434
           K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPDICGP T
Sbjct: 78  KDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-T 136

Query: 435 KKVHVIFSYKGKNHLIKKDIRCKGCVYTH 521
           ++VHVI +YKG+N LIKK+I CK    TH
Sbjct: 137 RRVHVILNYKGENKLIKKEITCKSDELTH 165



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 31/67 (46%), Positives = 49/67 (73%)
 Frame = +1

Query: 61  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 240
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 241 LSRKLNR 261
            + K ++
Sbjct: 72  RAAKFDK 78


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
 Frame = +3

Query: 258 PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKLEQKDMHGETPYEIMFGPDICGPG 431
           PF+ +    VVQ+ +K E+  +CGGGYLK+     + +  +   +T Y IMFGPD CG  
Sbjct: 130 PFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIMFGPDKCG-A 188

Query: 432 TKKVHVIFSYK 464
           T KVH+IF YK
Sbjct: 189 TGKVHLIFRYK 199


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +3

Query: 333 GYLKVFDCK------LEQKDM--HGET--PYEIMFGPDICGPGTKKVHVIFSYKGKNHLI 482
           G +K+F CK      L + D   H  T  P E       C   T+  H +  Y  +NH+ 
Sbjct: 511 GKIKIFKCKQCGHQSLSKDDQWAHARTHIPAEKQLNCQHCNFVTEYKHHL-EYHYRNHIG 569

Query: 483 KKDIRCKGCVY 515
            K  +CK C Y
Sbjct: 570 SKPFQCKKCAY 580


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +3

Query: 333 GYLKVFDCK------LEQKDM--HGET--PYEIMFGPDICGPGTKKVHVIFSYKGKNHLI 482
           G +K+F CK      L + D   H  T  P E       C   T+  H +  Y  +NH+ 
Sbjct: 533 GKIKIFKCKQCGHQSLSKDDQWAHARTHIPAEKQLNCQHCNFVTEYKHHL-EYHYRNHIG 591

Query: 483 KKDIRCKGCVY 515
            K  +CK C Y
Sbjct: 592 SKPFQCKKCAY 602


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
 Frame = +3

Query: 333 GYLKVFDCK------LEQKDM--HGET--PYEIMFGPDICGPGTKKVHVIFSYKGKNHLI 482
           G +K+F CK      L + D   H  T  P E       C   T+  H +  Y  +NH+ 
Sbjct: 533 GKIKIFKCKQCGHQSLSKDDQWAHARTHIPAEKQLNCQHCNFVTEYKHHL-EYHYRNHIG 591

Query: 483 KKDIRCKGCVY 515
            K  +CK C Y
Sbjct: 592 SKPFQCKKCAY 602


>Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +1

Query: 160 KLTAGKFFSDPEDDKGLKTSEDARFYALSRKLN-RSVMRVNPW*SSSLSNMNKTLTVEAD 336
           K+  GKF  D  DD+   T  +A    +S  L+  +V++       S +    T      
Sbjct: 166 KICDGKFDCDGGDDEKNCTKSNATTTTISNSLSTTTVVKSTTTLPISTTTTTTTTITPKH 225

Query: 337 TSRSLTANWSRR-TCTERLHM 396
           T+ + TA  +++ T TER H+
Sbjct: 226 TNLTTTATTTKKVTTTERAHL 246


>Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +1

Query: 160 KLTAGKFFSDPEDDKGLKTSEDARFYALSRKLN-RSVMRVNPW*SSSLSNMNKTLTVEAD 336
           K+  GKF  D  DD+   T  +A    +S  L+  +V++       S +    T      
Sbjct: 166 KICDGKFDCDGGDDEKNCTKSNATTTTISNSLSTTTVVKSTTTLPISTTTTTTTTITPKH 225

Query: 337 TSRSLTANWSRR-TCTERLHM 396
           T+ + TA  +++ T TER H+
Sbjct: 226 TNLTTTATTTKKVTTTERAHL 246


>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 263 ERFNLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQ 117
           E  ++ E +  L +  V   +S    L  +  ++ +F  SFP C LYT+
Sbjct: 349 ENDSITEMSVQLTTYGVNPAISMDRRLSRYSRISCSFHFSFPSCLLYTK 397


>U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm receptor
           protein 90 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 393 YEIMFGPDICG-PGTKKVHVIFSYKGKNHLIKKDIRCKGCVYTHFVHS 533
           YE++  P I   P    + VIF  K     I + IRCK C+++   +S
Sbjct: 279 YEVLVMPVITTYPCVDPIVVIFFVKDYRQAIWQTIRCKRCLFSRSRYS 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,457
Number of Sequences: 27780
Number of extensions: 334301
Number of successful extensions: 1025
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)