Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0142.Seq
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 166 3e-42
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 166 3e-42
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 165 6e-42
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.41
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.9
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 26 3.8
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 3.8
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 5.0
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 6.6
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 8.8
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 8.8
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 8.8
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 8.8
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 166 bits (403), Expect = 3e-42
Identities = 76/117 (64%), Positives = 92/117 (78%)
Frame = -3
Query: 601 GKLGLTLTYPAGFMNVVSIEKTNELFSSNL*VKGRFTIHRITPEEAKYKLCKVKRVATGP 422
GK+ T+P GFM+V+S+EKT E F +KGRFT+HRIT EEAKYKLCKVKRV G
Sbjct: 74 GKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133
Query: 421 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+G
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMG 190
Score = 100 bits (239), Expect = 2e-22
Identities = 44/71 (61%), Positives = 59/71 (83%)
Frame = -2
Query: 257 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 78
+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSI 248
Query: 77 AEERDKRIAAK 45
EERD+R A K
Sbjct: 249 TEERDRRRALK 259
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 166 bits (403), Expect = 3e-42
Identities = 76/117 (64%), Positives = 92/117 (78%)
Frame = -3
Query: 601 GKLGLTLTYPAGFMNVVSIEKTNELFSSNL*VKGRFTIHRITPEEAKYKLCKVKRVATGP 422
GK+ T+P GFM+V+S+EKT E F +KGRFT+HRIT EEAKYKLCKVKRV G
Sbjct: 74 GKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133
Query: 421 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+G
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMG 190
Score = 101 bits (241), Expect = 1e-22
Identities = 44/71 (61%), Positives = 59/71 (83%)
Frame = -2
Query: 257 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 78
+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSI 248
Query: 77 AEERDKRIAAK 45
EERD+R A K
Sbjct: 249 TEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 165 bits (400), Expect = 6e-42
Identities = 75/117 (64%), Positives = 92/117 (78%)
Frame = -3
Query: 601 GKLGLTLTYPAGFMNVVSIEKTNELFSSNL*VKGRFTIHRITPEEAKYKLCKVKRVATGP 422
GK+ T+P GFM+V+S++KT E F +KGRFT+HRIT EEAKYKLCKVKRV G
Sbjct: 74 GKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133
Query: 421 KNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+G
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMG 190
Score = 100 bits (239), Expect = 2e-22
Identities = 44/71 (61%), Positives = 59/71 (83%)
Frame = -2
Query: 257 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 78
+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSI 248
Query: 77 AEERDKRIAAK 45
EERD+R A K
Sbjct: 249 TEERDRRRALK 259
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.41
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +3
Query: 114 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 239
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 265 GRNLGVWAPSCPARDIPAPSTLCTSRTPRDTPSP 164
G N+G + P IP T + P DTP+P
Sbjct: 239 GDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTP 272
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 359 QSQRFHPVRHRNYED 315
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 553 VSIEKTNELFSSNL*VKGRFTIHRITPEEAKY 458
+ + K N+L S L + R +I R+ PEE K+
Sbjct: 135 LKMHKENQLKSMELLNRSRLSISRVKPEEWKF 166
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 392 WPHHPLPRPTYQSQR 348
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 218 DVSRGTRWCPHAQVTASRDHTQVPRLKLDEVHNLRSC 328
D+++ TRW P + +D +PR D+VH LR C
Sbjct: 1201 DLAQLTRWSP-MDIQGLQD---IPRPLRDKVHILRDC 1233
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 389 PHHPLPRPTYQSQRFHPVRHRNYEDY 312
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 120 RLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPKLRPPV 272
RL +AD + + RG+G+ + + G+G L +D H + P+
Sbjct: 284 RLYVVADEKKTWKERGQGILKVNVPKQRGSGSGRLLMRNDAVHRVIMNVPL 334
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 364 LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGVWAPSCPAR 224
L K N +++L++ + ++ IK + + + G WA PAR
Sbjct: 184 LKKNNSTLELEVRLQRFIELIKSKKLCQAIAFAKAHFGTWANEHPAR 230
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 245 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 150
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 386 HHPLPRPTYQSQRFHPVR 333
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,821
Number of Sequences: 5004
Number of extensions: 54094
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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