Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0142.Seq
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             162   2e-40
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      30   1.3  
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   4.0  
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                28   5.3  
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   7.0  
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)                      27   9.2  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  162 bits (394), Expect = 2e-40
 Identities = 73/120 (60%), Positives = 94/120 (78%)
 Frame = -3

Query: 610 RLIGKLGLTLTYPAGFMNVVSIEKTNELFSSNL*VKGRFTIHRITPEEAKYKLCKVKRVA 431
           ++ GK+    TYPAGFM+VV+I+KT E F     VKGRF +HRIT EEAKYKL +V+RV 
Sbjct: 495 KIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVD 554

Query: 430 TGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
            G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN+G
Sbjct: 555 VGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMG 614



 Score =  119 bits (286), Expect = 2e-27
 Identities = 50/71 (70%), Positives = 62/71 (87%)
 Frame = -2

Query: 257 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 78
           +GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG+RL+I
Sbjct: 613 MGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGVRLSI 672

Query: 77  AEERDKRIAAK 45
           AEERD+RIA K
Sbjct: 673 AEERDRRIAEK 683


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = -3

Query: 490 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 311
           I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 310 DFIKFESGNLCM 275
            F  FE G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 156 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 64
           +Q  H+  G+   H      GH  HHRR +G
Sbjct: 41  DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71


>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 155 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 42
           N + I G  T  +    LPR +G+  TIA+E D+R A  +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 155 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 42
           N + I G  T  +    LPR +G+  TIA+E D+R A  +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545


>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -1

Query: 249 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 76
           C H H +  +    + H +H  LH TH+  E  +    R G  G      R    PH+R
Sbjct: 18  CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74


>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = -1

Query: 150 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 52
           +VHN +G      EGV    +R GH  H  RG+   HR
Sbjct: 197 QVHNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -1

Query: 243 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 73
           HH  P     +LRH  H+  +  H RH      H+R  H   H       H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226


>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 541

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 280 CMITGGRNLGVWAPSCPARDIPAPSTLCT 194
           C  T G+  G+    CPA+D  A + LC+
Sbjct: 422 CCCTAGKAWGISCELCPAKDTRAYNELCS 450


>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 177 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 49
           THL  E  + +  R+   G  +AAA +   P + R  G  +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273


>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 55  MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEP 216
           + LSR    + R+P P     ++ +P P   T + +   +CPV  +  TMS  P
Sbjct: 48  LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFP 96


>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
          Length = 244

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = -1

Query: 207 RHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 79
           +H  H+  HGTH +H V  +  H     + V        H  HH
Sbjct: 137 QHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,716,278
Number of Sequences: 59808
Number of extensions: 480570
Number of successful extensions: 1669
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)