Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0141.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   2.3  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.1  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   3.1  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.1  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    24   9.4  
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb...    24   9.4  

>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 79  FTLFTL-IKGQYQLFRAE*ATFRLKIVSSISQFFDKAT 189
           FT FTL  K +  L +A+   FRLK+V  I+ FF + T
Sbjct: 136 FTAFTLSFKDRKILMQAD-VFFRLKLVFKIAFFFTQTT 172


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -1

Query: 275 TSSLIEDSLIHIIDLSENSIKQASLIDSLVALSKNWEIDETILRRNVAHS 126
           T  ++ D+L+  + L      +  L   +    KNW +DE      +AHS
Sbjct: 142 TKEVVPDALVGTLALWAKYSYEYDLTSIVSLFGKNWTVDELGWGTYIAHS 191


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = -1

Query: 407 HRKEQVSKGNQGTHNRIDRKELEVLAANCERTAEGGAL*KITALTSSL--IEDSLIHIID 234
           H  EQV   +Q   +  +RK+  + A++  R  E   + + +AL S L  ++     + +
Sbjct: 158 HLGEQVQSAHQALSDIEERKKQHMFASSSSRVKEEILVQEKSALVSDLASLQSDHSKVCE 217

Query: 233 LSENSIKQASLIDSLVA--LSKNWEIDETI 150
             E S +Q   ++  +A    +N E++E I
Sbjct: 218 KLEVSSRQVQDLEKKLAGLAQQNTELNEKI 247


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 246 DQAIFNET*CKCCNLLK--SASFSSSFTVR 329
           D   F  T  + CNLLK  S+SF S+F  R
Sbjct: 569 DSNFFETTWVELCNLLKLASSSFESNFHSR 598


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 249 DPHN*SQREQHKTGVTYRFTCRFIKKLGN 163
           D H+  + E H + VT RF  RFI  LGN
Sbjct: 167 DIHSRYRTEAH-SDVTARFNERFILSLGN 194


>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -1

Query: 269 SLIEDSLIHIIDLSENSIKQASLIDSLVALSKNWEIDETI--LRRNV 135
           SLIE + I  ++      K+ S++ +L   S+++++DE +  L +NV
Sbjct: 50  SLIESAKIAYLNTKNTPPKEDSMLPNLKKDSEDFDMDEFVKELEKNV 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,851
Number of Sequences: 5004
Number of extensions: 26435
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)