Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0141.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 28 3.0
01_05_0116 - 18294960-18295078,18295967-18296102,18297167-182972... 28 4.0
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 27 7.0
05_05_0226 + 23442971-23443857,23444209-23446324 27 7.0
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750... 27 7.0
11_06_0750 + 26917239-26918071,26918319-26920773 27 9.2
11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610 27 9.2
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 27 9.2
02_02_0115 + 6946945-6947087,6947511-6947748 27 9.2
01_01_0536 - 3926450-3928447 27 9.2
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 298 APPSAVRSQFAASTSSSFRSMRLCVP 375
APP R+ FAAS++S+ + RL VP
Sbjct: 48 APPPPRRTPFAASSASASAARRLAVP 73
>01_05_0116 -
18294960-18295078,18295967-18296102,18297167-18297275,
18298027-18298070,18298305-18298372,18298625-18298695,
18299068-18300005
Length = 494
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 268 LDVSAVIF*RAPPSAVRSQFAASTSSSFRSMRLCVP*FPLDTCSFL 405
L SA +F APP ++ S AAS F + C+P LD L
Sbjct: 101 LPSSASLFLGAPPPSLESDAAASAPYPFAPIPRCLPHAVLDAALHL 146
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 324 VRRQYLKFLPINAVMCSLISLRHLF 398
+RR +KFLPI AVM L L HLF
Sbjct: 623 LRRTKIKFLPIEAVM--LPHLAHLF 645
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 324 VRRQYLKFLPINAVMCSLISLRHLF 398
+RR +KFLPI A+M L L HLF
Sbjct: 646 LRRTQIKFLPIEAIM--LPHLAHLF 668
>02_02_0179 +
7500647-7500779,7503021-7503222,7503356-7503427,
7503655-7503726,7504212-7504283,7504711-7504782,
7505045-7505116,7505209-7505280,7505688-7505759,
7506215-7506292,7506670-7506729,7506810-7506848,
7506949-7506998,7507110-7507480,7508467-7508662,
7508856-7508936,7509694-7509848,7510302-7510512,
7510648-7510882,7510995-7511145,7511813-7512181
Length = 944
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -1
Query: 275 TSSLIEDSLIHIIDLSENSIKQASLIDSL-VALSKNWEIDETILRRNVAHSALNS 114
TSS+ +D +H++D +E ++ L++ + L ++ +E + NVA N+
Sbjct: 808 TSSMSDDEYLHLLDWAERLKQEGRLLEIVDQRLGSHYSQEEALRMLNVALLCTNT 862
>11_06_0750 + 26917239-26918071,26918319-26920773
Length = 1095
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 324 VRRQYLKFLPINAVMCSLISLRHLF 398
+RR +KFLPI A+M L L HLF
Sbjct: 691 LRRTEIKFLPIEAIM--LPHLAHLF 713
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 324 VRRQYLKFLPINAVMCSLISLRHLF 398
+RR +KFLPI A+M L L HLF
Sbjct: 726 LRRTEIKFLPIEAIM--LPHLAHLF 748
>11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610
Length = 913
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 324 VRRQYLKFLPINAVMCSLISLRHLF 398
+RR +KFLPI A+M L L HLF
Sbjct: 631 LRRTEIKFLPIEAIM--LPHLAHLF 653
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 260 EDSLIHIIDLSENSIKQASLIDSLVALSKNWEIDETILRRNVAHSALNS 114
E S +++ + +S + L+ SL LSK + DE + HSA++S
Sbjct: 718 EFSAYNLLCVMLHSNNKRDLLSSLARLSKQAKQDEAVKHALAVHSAVSS 766
>02_02_0115 + 6946945-6947087,6947511-6947748
Length = 126
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 301 PPSAVRSQFAASTSSSFRSMRLCVP*FP 384
PP A R AS SS+ +S +C P FP
Sbjct: 42 PPPARRWDIVASVSSTRQSSPMCGPPFP 69
>01_01_0536 - 3926450-3928447
Length = 665
Score = 26.6 bits (56), Expect = 9.2
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 94 LIKGQYQL--FRAE*ATFRLKIVSSISQFFDKATSESISDACFMLFSLRSIMWIRLSSMR 267
+I G Q+ FR TFR + + D+ T S+ AC L +L + W R+ R
Sbjct: 264 MIDGYVQVGRFRDALETFRYMQICKVRA--DEFTMVSVVTACAQLGALETGEWARIYMGR 321
Query: 268 LDVSAVIF 291
L + +F
Sbjct: 322 LGIKMDVF 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,083,305
Number of Sequences: 37544
Number of extensions: 144644
Number of successful extensions: 405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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