Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0141.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51591| Best HMM Match : HECT (HMM E-Value=0)                        31   0.33 
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        28   3.1  
SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_30075| Best HMM Match : zf-CHC2 (HMM E-Value=5.4)                   27   7.2  
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)               27   9.5  
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_51591| Best HMM Match : HECT (HMM E-Value=0)
          Length = 694

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -1

Query: 392 VSKGNQGTHNRIDRKELEVLAANCERTAEGGAL*KITALTSSLIEDSLIH 243
           V +GN G+ ++      E ++   ++  EGG L + T +T S+I ++ +H
Sbjct: 324 VDQGNSGSIDQQGSHASETMSLGADQATEGGDLPRNTNITQSIISETELH 373


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 107 WPFINVNSVNCSSYSFMYVYYYLFFIREKLNKN 9
           W FI++++ NC+ +   + Y Y    +EK NK+
Sbjct: 422 WAFIDLSTFNCNHHCVCWYYCYWKPKKEKQNKD 454


>SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 21/89 (23%), Positives = 40/89 (44%)
 Frame = -1

Query: 392  VSKGNQGTHNRIDRKELEVLAANCERTAEGGAL*KITALTSSLIEDSLIHIIDLSENSIK 213
            + + + G+  R  R++ ++ A   E+   G      + +   L ED L    D S +   
Sbjct: 834  LDRKDDGSTIRTKRRQHKLPATPVEKPRRGSGSTTSSEIVPPLAEDELR---DESPSGTL 890

Query: 212  QASLIDSLVALSKNWEIDETILRRNVAHS 126
            +    D +  ++KN + DE  LRR +A +
Sbjct: 891  RQKTPDEVTRMTKNLKADEGELRRELAET 919


>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1110

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -1

Query: 287  ITALTSSLIEDSLIHIIDLSENSIKQASLIDSLVALSKNWEIDETILR 144
            + AL ++L ++  + ++DL  +S ++ S+      LS NW + +  LR
Sbjct: 911  VVALANALKQNYNLRVLDLEGDSFERDSVKAIAEMLSGNWTLQDLSLR 958


>SB_30075| Best HMM Match : zf-CHC2 (HMM E-Value=5.4)
          Length = 335

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 233 LSENSIKQASLIDSL-VALSKNWEIDETILRRNV 135
           LS+ S+++    D+  V LS+N +IDE++ R NV
Sbjct: 172 LSDLSVQRLYFADNRGVCLSRNGDIDESVYRDNV 205


>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
          Length = 1002

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/78 (23%), Positives = 31/78 (39%)
 Frame = +1

Query: 133 ATFRLKIVSSISQFFDKATSESISDACFMLFSLRSIMWIRLSSMRLDVSAVIF*RAPPSA 312
           A F  KIV    +   K  +E +++  F+L   R  +   L   R+  S   F R P ++
Sbjct: 751 ARFEKKIVERFHRNASKLANEDVAERVFLLMDERINLTFHLEDNRVTASTREFARPPHTS 810

Query: 313 VRSQFAASTSSSFRSMRL 366
            +      T     S ++
Sbjct: 811 EKGGVLTMTPDMTTSFQV 828


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 240 N*SQREQHKTGVTYRFTCRFIKKLGNR*NDFKTKRRSLRSE 118
           N S+  +H T +  RF+C   + L +   D   +RR  R E
Sbjct: 659 NDSRGSEHTTPIGVRFSCNAGQPLNDTLEDLNARRRDRRVE 699


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,722,937
Number of Sequences: 59808
Number of extensions: 178003
Number of successful extensions: 448
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)