Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0141.Seq
         (449 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146675-1|AAI46676.1| 1134|Homo sapiens GOLGA3 protein protein.       29   7.3  
BC142658-1|AAI42659.1| 1134|Homo sapiens GOLGA3 protein protein.       29   7.3  
AK125475-1|BAC86173.1|  913|Homo sapiens protein ( Homo sapiens ...    29   9.7  

>BC146675-1|AAI46676.1| 1134|Homo sapiens GOLGA3 protein protein.
          Length = 1134

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -1

Query: 389  SKGNQGTHNRIDRKELEVLAANCERTAEGGAL*KITALTSSLIEDSLIHIIDLSENSIKQ 210
            S  +   H RI   E E+ A +  +T     L ++ ALTS  +E+S   +++L E+ ++ 
Sbjct: 1034 SDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLEL-EDEVRP 1092

Query: 209  ASLI 198
              L+
Sbjct: 1093 GHLL 1096


>BC142658-1|AAI42659.1| 1134|Homo sapiens GOLGA3 protein protein.
          Length = 1134

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -1

Query: 389  SKGNQGTHNRIDRKELEVLAANCERTAEGGAL*KITALTSSLIEDSLIHIIDLSENSIKQ 210
            S  +   H RI   E E+ A +  +T     L ++ ALTS  +E+S   +++L E+ ++ 
Sbjct: 1034 SDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLEL-EDEVRP 1092

Query: 209  ASLI 198
              L+
Sbjct: 1093 GHLL 1096


>AK125475-1|BAC86173.1|  913|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43486 fis, clone OCBBF3003592, weakly  similar
           to Dynein beta chain, flagellar outer arm. ).
          Length = 913

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 406 IEKNKCLREIREHITALIGRNLRYWRRTVNELLKEALFKRLQHLHQ 269
           I+   C+R    H+   +  N + W  ++ +LL E+  + L +LH+
Sbjct: 859 IKDEHCIRLQLRHLANTVQENAKSWVISLGKLLNESAKEELYNLHE 904


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,755,597
Number of Sequences: 237096
Number of extensions: 753865
Number of successful extensions: 1955
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1955
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)