Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0141.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204171-1|AAO39175.1|  424|Caenorhabditis elegans nuclear recep...    31   0.39 
AF022978-1|AAG24179.2|  424|Caenorhabditis elegans Nuclear hormo...    31   0.39 
U41023-4|AAA82343.2|  414|Caenorhabditis elegans Adaptin, mu/med...    28   2.7  
Z82266-6|CAB05176.1|  393|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>AY204171-1|AAO39175.1|  424|Caenorhabditis elegans nuclear receptor
           NHR-55 protein.
          Length = 424

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 222 QHKTGVTYRFTCRFIKKLGNR*NDFKTKRRSLRSEQLILAFY*CK*CKL 76
           +H   VT R    F ++ G+  N+FK  RR++  E L   ++ CK C+L
Sbjct: 38  KHFGAVTCRACAAFFRRCGSA-NNFKPCRRNMNCEFLKNGWFNCKPCRL 85


>AF022978-1|AAG24179.2|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 55 protein.
          Length = 424

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 222 QHKTGVTYRFTCRFIKKLGNR*NDFKTKRRSLRSEQLILAFY*CK*CKL 76
           +H   VT R    F ++ G+  N+FK  RR++  E L   ++ CK C+L
Sbjct: 38  KHFGAVTCRACAAFFRRCGSA-NNFKPCRRNMNCEFLKNGWFNCKPCRL 85


>U41023-4|AAA82343.2|  414|Caenorhabditis elegans Adaptin, mu/medium
           chain (clathrinassociated complex) protein 3 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 139 FRLKIVSSISQFFDKATSESISDACFMLFSL 231
           F  +++ + +Q+FD+ +  S+ + C M+F L
Sbjct: 82  FLHRVIQTFTQYFDEFSDSSMKENCVMVFEL 112


>Z82266-6|CAB05176.1|  393|Caenorhabditis elegans Hypothetical
           protein F23B2.10 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 391 CLREIREHITALIGRNLRYWRRTVNELLKEALF 293
           C  E  + +TA+I RNL+   ++  E LKE  +
Sbjct: 316 CTTEELDKVTAIINRNLKIQGKSSRETLKEVYY 348


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 233  LSENSIKQASLIDSLVALSKNWEIDETILRR 141
            ++ + IK+ASL+  L++ S  WE D T+  R
Sbjct: 1050 ITNHEIKEASLLTELLSESSLWEKDLTMFYR 1080


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 233  LSENSIKQASLIDSLVALSKNWEIDETILRR 141
            ++ + IK+ASL+  L++ S  WE D T+  R
Sbjct: 1050 ITNHEIKEASLLTELLSESSLWEKDLTMFYR 1080


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,325,864
Number of Sequences: 27780
Number of extensions: 141749
Number of successful extensions: 371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)