Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0141.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    30   0.83 
At5g11090.1 68418.m01295 serine-rich protein-related contains so...    28   2.5  
At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = -1

Query: 278 LTSSLIEDSLIHIIDLSENSIKQASLIDSLVALSKNWEID 159
           L SSL+  S I  IDL  NS+   SL D L   SK W ID
Sbjct: 205 LHSSLLSLSTIEYIDLRANSL-SGSLPDDLKCGSKLWFID 243


>At5g11090.1 68418.m01295 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 217

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +1

Query: 295 RAPPSAVRSQFAASTSSSFRS 357
           RA PS+  S FA+STSSSF S
Sbjct: 30  RAVPSSSSSAFASSTSSSFSS 50


>At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 862

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 322 VNELLKEALFKRLQHLHQV 266
           VNELL+E L  R+ ++HQV
Sbjct: 616 VNELLEEMLSNRVSNIHQV 634


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,686,633
Number of Sequences: 28952
Number of extensions: 126685
Number of successful extensions: 363
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)