Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0140.Seq
         (439 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    44   0.002
UniRef50_Q7RAM4 Cluster: Putative uncharacterized protein PY0647...    32   6.2  

>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 43.6 bits (98), Expect = 0.002
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = +3

Query: 102 GKCFR*CSSCDXPRISPLTSQYRMPPVIPIN 194
           GKCFR C S +  RISPLTS+Y+ P   PIN
Sbjct: 259 GKCFRSCLSPENLRISPLTSEYKCPQATPIN 289


>UniRef50_Q7RAM4 Cluster: Putative uncharacterized protein PY06475;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY06475 - Plasmodium yoelii
           yoelii
          Length = 24

 Score = 31.9 bits (69), Expect = 6.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -2

Query: 153 EVKFLDXRKTNISESICQRCFH 88
           EVKFLD  +TN  ESIC + FH
Sbjct: 3   EVKFLDFLETNNCESICLKYFH 24


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 300,683,910
Number of Sequences: 1657284
Number of extensions: 4165959
Number of successful extensions: 5308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5308
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)