Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0140.Seq
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   2.9  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   5.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   8.9  

>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 257 CWNNRI*SRXYXVGFQNSEVMINRDNWGHSVLRR 156
           CWN+        VGF+N E+ I   + GH V +R
Sbjct: 75  CWNHD--GNLIVVGFKNGELKIIDSSTGHLVEQR 106


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 165 IATLEVKFLDXRKTNISESICQRCFHQSRTKVXGXKA 55
           IA   +   D +KT+I   +   CF  +  K  G KA
Sbjct: 405 IAVERINVKDGKKTSIRNQLQNLCFKDNDIKYIGQKA 441


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 1    SPGLQEFXAAVRTXAXSNRLXTXNFRS*LMKTPLANAFADVR-LATIQEFHL 153
            SP +Q F  AVR+     R     F +   K PL N F ++  ++  Q F++
Sbjct: 3128 SPQVQWFWRAVRSFDEEERAKLLQFATGTSKVPL-NGFKELEGMSGFQRFNI 3178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,864
Number of Sequences: 5004
Number of extensions: 17822
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)