Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0140.Seq
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   3e-04
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   3e-04
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.001
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.002
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.045
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.96 
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_36260| Best HMM Match : CAF1 (HMM E-Value=0)                        27   8.9  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 22/30 (73%), Positives = 23/30 (76%)
 Frame = -3

Query: 143 SWXVARRTSAKAFAKGVFINQERKLXVXRR 54
           SW   RRT+AKAFAK VFINQERKL   RR
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRR 33


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = -3

Query: 128 RRTSAKAFAKGVFINQERKLXVXRR 54
           RRT+AKAFAK VFINQERKL   RR
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRR 33


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = -3

Query: 128 RRTSAKAFAKGVFINQERKLXVXRR 54
           RRT+AKAFAK VFINQERKL   RR
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRR 33


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = -3

Query: 128 RRTSAKAFAKGVFINQERKLXVXRR 54
           RRT+AKAFAK VFINQERKL   RR
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRR 33


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = -3

Query: 128 RRTSAKAFAKGVFINQERKLXVXRR 54
           RRT+AKAFAK VFINQERKL   RR
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRR 35


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = -3

Query: 125 RTSAKAFAKGVFINQERKLXVXRR 54
           RT+AKAFAK VFINQERKL   RR
Sbjct: 2   RTTAKAFAKNVFINQERKLEDRRR 25


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = -3

Query: 125 RTSAKAFAKGVFINQERKLXVXRR 54
           RT+AKAFAK VFINQERKL   RR
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRR 52


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -2

Query: 150 VKFLDXRKTNISESICQRCFHQSRTKV 70
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -2

Query: 150 VKFLDXRKTNISESICQRCFHQSRTKV 70
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 34.3 bits (75), Expect = 0.045
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 150 VKFLDXRKTNISESICQRCFHQSRTKV 70
           VKFLD RKTN  ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 147 KFLDXRKTNISESICQRCFHQSRTKV 70
           + L  RKTN  ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 150 VKFLDXRKTNISESICQRCFHQSRTKV 70
           VKFLD RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 128 RRTS-AKAFAKGVFINQERKLXVXRR 54
           R+T+  ++ AK VFINQERKL   RR
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRR 33


>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 120 CSSCDXPRISPLTSQYRMPPVIP 188
           CS CD P I    S Y+ PP  P
Sbjct: 344 CSECDEPHIYAAPSNYQEPPSSP 366


>SB_36260| Best HMM Match : CAF1 (HMM E-Value=0)
          Length = 398

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 328 PPRHSPXSTAIGF*YXTGVLRTPAHRRYAXQTC 426
           PP HSP  ++    Y T V+  P H+ +    C
Sbjct: 200 PPVHSPTGSSTKNVYKTPVIVPPEHQEFVSGAC 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,357,590
Number of Sequences: 59808
Number of extensions: 141775
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)