Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0139.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505... 28 5.6
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105... 28 5.6
07_03_0014 - 12428713-12428860,12429340-12429580,12429664-124303... 28 5.6
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070... 28 5.6
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 28 5.6
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 28 5.6
02_05_1149 + 34471730-34471790,34471975-34472056,34472605-344732... 28 5.6
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 5.6
>09_04_0256 +
16148820-16148998,16149547-16150241,16150317-16150573,
16150668-16151349,16151423-16151626,16151715-16152449,
16152533-16152698,16153253-16153400
Length = 1021
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RKFVVMPTLNQSKFDEAKFKGDLEARYVLYCLS 101
++ + M + S F ++KF G LE RY CLS
Sbjct: 492 KRDLFMQWMASSVFMQSKFSGTLEGRYAHACLS 524
>07_03_1652 -
28409097-28409165,28409788-28409911,28410317-28410557,
28410641-28411375,28411464-28411667,28411741-28412422,
28412517-28412773,28412849-28413543,28414003-28414250
Length = 1084
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RKFVVMPTLNQSKFDEAKFKGDLEARYVLYCLS 101
++ + M + S F ++KF G LE RY CLS
Sbjct: 515 KRDLFMQWMASSVFMQSKFSGTLEGRYAHACLS 547
>07_03_0014 -
12428713-12428860,12429340-12429580,12429664-12430398,
12430487-12430690,12430764-12431445,12431540-12431796,
12431872-12432566,12433012-12433172,12434039-12434383,
12434399-12434631,12434656-12434740
Length = 1261
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RKFVVMPTLNQSKFDEAKFKGDLEARYVLYCLS 101
++ + M + S F ++KF G LE RY CLS
Sbjct: 707 KRDLFMQWMASSVFMQSKFSGTLEGRYAHACLS 739
>05_05_0338 + 24204301-24206262,24206337-24206495,24206864-24207035,
24207544-24207842,24208301-24208355,24208438-24208487,
24208522-24208827
Length = 1000
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +2
Query: 296 PIYYRRSNTKPHNYKIISQ 352
P+ + ++NTKPH Y++I +
Sbjct: 977 PVEFNKTNTKPHGYELIPE 995
>05_01_0595 +
5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RKFVVMPTLNQSKFDEAKFKGDLEARYVLYCLS 101
++ + M + S F ++KF G LE RY CLS
Sbjct: 636 KRDLFMQWMASSVFMQSKFSGTLEGRYAHACLS 668
>03_03_0039 -
13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RKFVVMPTLNQSKFDEAKFKGDLEARYVLYCLS 101
++ + M + S F ++KF G LE RY CLS
Sbjct: 488 KRDLFMQWMASSVFMQSKFSGTLEGRYAHACLS 520
>02_05_1149 +
34471730-34471790,34471975-34472056,34472605-34473299,
34473375-34473631,34473726-34474407,34474481-34474684,
34474773-34474903,34475068-34475263,34475347-34475587,
34476067-34476214
Length = 898
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RKFVVMPTLNQSKFDEAKFKGDLEARYVLYCLS 101
++ + M + S F ++KF G LE RY CLS
Sbjct: 480 KRDLFMQWMASSVFMQSKFSGTLEGRYAHACLS 512
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RKFVVMPTLNQSKFDEAKFKGDLEARYVLYCLS 101
++ + M + S F ++KF G LE RY CLS
Sbjct: 1848 KRDLFMQWMASSVFMQSKFSGTLEGRYAHACLS 1880
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,243
Number of Sequences: 37544
Number of extensions: 168838
Number of successful extensions: 300
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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