Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0139.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55183| Best HMM Match : SGS (HMM E-Value=1.6)                       29   3.3  
SB_11574| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_6304| Best HMM Match : RVT_1 (HMM E-Value=3.2e-18)                  29   3.3  
SB_32712| Best HMM Match : PAN (HMM E-Value=0.18)                      29   4.3  
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_46731| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)                 28   7.5  

>SB_55183| Best HMM Match : SGS (HMM E-Value=1.6)
          Length = 242

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 335 NCEVLC-LSDDNKLVLKAIFFPFIIIKQERFISRNTNTRNIVVDYKTNKK 189
           N E LC L D N+LV+    FP   I +  +IS +  T+N +     NK+
Sbjct: 34  NGERLCELCDLNELVITGTLFPHRTIHKATWISPDGKTKNQIDHVLVNKR 83


>SB_11574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 335 NCEVLC-LSDDNKLVLKAIFFPFIIIKQERFISRNTNTRNIVVDYKTNKK 189
           N E LC L D N+LV+    FP   I +  +IS +  T+N +     NK+
Sbjct: 230 NGERLCELCDLNELVITGTLFPHRTIHKATWISPDGKTKNQIDHVLVNKR 279


>SB_6304| Best HMM Match : RVT_1 (HMM E-Value=3.2e-18)
          Length = 404

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 335 NCEVLC-LSDDNKLVLKAIFFPFIIIKQERFISRNTNTRNIVVDYKTNKK 189
           N E LC L D N+LV+    FP   I +  +IS +  T+N +     NK+
Sbjct: 34  NGERLCELCDLNELVITGTLFPHRTIHKATWISPDGKTKNQIDHVLVNKR 83


>SB_32712| Best HMM Match : PAN (HMM E-Value=0.18)
          Length = 542

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 437 YFCTYLKKKKEAKHDKIMSVKLLSRSYLIHHRC*KDYKEIK 559
           Y  ++L++ + AK   +M + L   ++L H RC  D+ EI+
Sbjct: 113 YARSHLERCEPAK--SVMGIFLTENTFLFHERCENDFPEIR 151


>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 335 NCEVLC-LSDDNKLVLKAIFFPFIIIKQERFISRNTNTRNIVVDYKTNKK 189
           N E LC L D ++LV+ A  FP   I +  +IS +  T+N +     NK+
Sbjct: 62  NGERLCELCDLDELVITATLFPHRTIHKATWISPDGKTKNQIDHVLVNKR 111


>SB_46731| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
          Length = 519

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 335 NCEVLC-LSDDNKLVLKAIFFPFIIIKQERFISRNTNTRNIVVDYKTNK 192
           N E LC L D N+LV+    FP   I +  +IS +  T+N +     NK
Sbjct: 82  NGERLCELCDLNELVITGTLFPHRTIHKATWISPDGKTKNQIDHVFVNK 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,668,258
Number of Sequences: 59808
Number of extensions: 228654
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)