Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0137.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F2CA36 Cluster: PREDICTED: hypothetical protein;...    33   4.7  
UniRef50_A0BU14 Cluster: Chromosome undetermined scaffold_128, w...    33   4.7  

>UniRef50_UPI0000F2CA36 Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 391

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +1

Query: 121 LSRLQIY*FRFLYFTVAIYSKQIN*KVXSALYYLRHLNMKFKTLHYMXPFTILLTFLSIA 300
           ++RL ++ ++ LY T   YS  +N +     Y+   L M  + LH    + IL       
Sbjct: 277 ITRLIVFPYKVLYSTY--YSSMVNHEPFFGYYFTNGLLMILQALHVFWSYLILCMLFRYV 334

Query: 301 NCSVFAK 321
           NC    K
Sbjct: 335 NCGTMEK 341


>UniRef50_A0BU14 Cluster: Chromosome undetermined scaffold_128, whole
            genome shotgun sequence; n=8; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_128, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 2907

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 435  RVRIYSSNLNXKFICNLXNQYCTFQARNTRDTLIQYLRLXKYRAICN 295
            ++RIY+ N   + + NL N YC  Q  N   +  Q L L K +   N
Sbjct: 2242 QMRIYAVNSQLEIVRNLTNTYCELQINNLNSSQQQNLSLNKNKIYFN 2288


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 333,891,043
Number of Sequences: 1657284
Number of extensions: 4901227
Number of successful extensions: 8414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8413
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)