Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0137.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.9  
SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06)                  27   6.5  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  

>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 147 ESVYLKSTKIIDRR*VLNSLARIIYKYIEKRQVPYFDTV 31
           +++Y+    +IDR  ++NSLA +I K+I   +  Y D +
Sbjct: 450 KTIYIYYDTMIDRMAMINSLAAVILKFIIVSRRDYTDFI 488


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 184  QIN*KVXSALYYLRHLNMKFKTLHYMXPFTI 276
            ++  KV S LY LRHLN++  T      FT+
Sbjct: 2015 EVTRKVASRLYLLRHLNVRVSTPKSSVVFTL 2045


>SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06)
          Length = 623

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 192 INLLTINCYSKVQKPESVYLKSTKIIDRR*VLNSLARIIYKY 67
           +NL+T  CY  ++ P  +  K+TK +    V+N L  ++ KY
Sbjct: 133 VNLMTGCCYKLLENPAVIRNKTTKDV----VINLLGIVVKKY 170


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 213 ILSTSSKYEVQNAALYVXIYDIIDIFEYCKLL 308
           ILS + ++ VQ+ +  V + D++DI E+ KLL
Sbjct: 208 ILSYAQRFIVQDKSSEVEMTDLVDIVEHRKLL 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,623,966
Number of Sequences: 59808
Number of extensions: 159203
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)