Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0136.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23CR8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_A2Q4E3 Cluster: Leucine-rich repeat, typical subtype; n...    32   8.9  

>UniRef50_Q23CR8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 814

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +2

Query: 332 SSLQNIYSTLNNTIHLITRKLYYNTHTPLIF*LKKKQLLNYVQAKSSIIXIRNLHKTLDQ 511
           SSL   Y+  NN I+L+  K  Y  H   +  +KK Q  +  Q  S      N H ++  
Sbjct: 3   SSLVYFYNNNNNLINLLENKKQYEKHKTELDNIKKSQSYSISQGISPEKKFNNFHDSMRG 62

Query: 512 VF 517
           VF
Sbjct: 63  VF 64


>UniRef50_A2Q4E3 Cluster: Leucine-rich repeat, typical subtype; n=2;
           Medicago truncatula|Rep: Leucine-rich repeat, typical
           subtype - Medicago truncatula (Barrel medic)
          Length = 445

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 175 CCQQLKVLPKCMHLYALLETSSCYSKDTTPFMLSIEC 285
           CCQ+L++LP+       L+ S+C S +TT F  +  C
Sbjct: 262 CCQKLQLLPEISSSMTELDASNCDSLETTKFNPAKPC 298


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,310,996
Number of Sequences: 1657284
Number of extensions: 10120221
Number of successful extensions: 20423
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20405
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)